View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5802-13 (Length: 103)

Name: Solexa-NF5802-13
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5802-13
Solexa-NF5802-13
[»] chr4 (6 HSPs)
chr4 (5-103)||(4995902-4996000)
chr4 (1-91)||(18760615-18760705)
chr4 (33-84)||(24642984-24643035)
chr4 (33-84)||(27659275-27659326)
chr4 (33-84)||(49510196-49510247)
chr4 (33-84)||(55753381-55753432)
[»] chr3 (11 HSPs)
chr3 (5-103)||(12245661-12245759)
chr3 (1-91)||(9991396-9991486)
chr3 (1-91)||(6498462-6498552)
chr3 (1-103)||(12185098-12185200)
chr3 (1-94)||(10634521-10634614)
chr3 (5-67)||(16389027-16389089)
chr3 (33-94)||(8777336-8777397)
chr3 (33-94)||(18486669-18486730)
chr3 (33-84)||(11280537-11280588)
chr3 (33-84)||(28322375-28322426)
chr3 (33-84)||(39374733-39374784)
[»] scaffold0747 (1 HSPs)
scaffold0747 (5-103)||(4980-5078)
[»] chr6 (9 HSPs)
chr6 (1-103)||(26024339-26024441)
chr6 (31-103)||(22450854-22450926)
chr6 (13-91)||(27375391-27375469)
chr6 (13-91)||(27465748-27465826)
chr6 (33-88)||(32309195-32309250)
chr6 (33-88)||(4633527-4633582)
chr6 (33-84)||(12724985-12725036)
chr6 (33-84)||(27344344-27344395)
chr6 (33-84)||(27405084-27405135)
[»] scaffold0865 (1 HSPs)
scaffold0865 (5-91)||(4464-4550)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-67)||(20998-21064)
[»] chr5 (10 HSPs)
chr5 (5-103)||(31446083-31446181)
chr5 (40-88)||(17615323-17615371)
chr5 (40-88)||(31356797-31356845)
chr5 (33-88)||(17727180-17727235)
chr5 (33-88)||(36695956-36696011)
chr5 (33-94)||(14449589-14449650)
chr5 (33-94)||(35223727-35223788)
chr5 (33-84)||(15767018-15767069)
chr5 (33-84)||(27044784-27044835)
chr5 (33-84)||(37732512-37732563)
[»] scaffold0906 (1 HSPs)
scaffold0906 (1-70)||(2082-2151)
[»] chr7 (2 HSPs)
chr7 (33-94)||(42868489-42868550)
chr7 (33-84)||(11007815-11007866)
[»] chr1 (5 HSPs)
chr1 (33-94)||(5835820-5835881)
chr1 (33-94)||(47616080-47616141)
chr1 (33-84)||(3174195-3174246)
chr1 (33-84)||(35398696-35398747)
chr1 (33-84)||(38097676-38097727)
[»] scaffold0105 (1 HSPs)
scaffold0105 (33-84)||(45132-45183)
[»] chr8 (2 HSPs)
chr8 (33-84)||(13696742-13696793)
chr8 (33-84)||(36295572-36295623)
[»] chr2 (3 HSPs)
chr2 (33-84)||(27224034-27224085)
chr2 (33-84)||(35255611-35255662)
chr2 (33-84)||(35266220-35266271)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 4996000 - 4995902
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcgtcc 103  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  4996000 gactacatgcccagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctcttccagttcttccagcatctgctcactgcgtcc 4995902  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18760705 - 18760615
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    |||||||||||||||||  | ||||||| ||||||||| |||||||||||  ||||| ||||||||||||   |||||||||||| |||||    
T  18760705 gcatgactacaggctcaacactggtagttatctttgctttcttaggacttctgtcctcatcccagttctctaccagttcttccagaatctg 18760615  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 24642984 - 24643035
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  24642984 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 24643035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27659275 - 27659326
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  27659275 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 27659326  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 49510196 - 49510247
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  49510196 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 49510247  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 55753432 - 55753381
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  55753432 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 55753381  T

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Target: chr3 (Bit Score: 75; Significance: 4e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 12245759 - 12245661
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcgtcc 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||||||||||||| |||||||||||    
T  12245759 gactacaggcccagtattggtagtcatctttgctctcttaggacttaagtcctcatcccagttctcttccagttcttccagcatctgctcactgcgtcc 12245661  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9991486 - 9991396
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||  ||||| ||||||||||||   |||||||||||| |||||    
T  9991486 gcatgactacaggctcagtactggtagtcatctttgctttcttaggacttctgtcctcatcccagttctctaccagttcttccagaatctg 9991396  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6498552 - 6498462
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||| |||||||   |||||||||||| |||||    
T  6498552 gcatgactacaggctcagtactggtagtcatctttgctttcttaggacttctgtcctcatcctagttctctaccagttcttccagaatctg 6498462  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12185098 - 12185200
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcg 100  Q
    |||||||||||||||||||  || ||||| |||||  | |||||||||||||||||||||| || ||||| |  ||||||||||||||||| ||||||||    
T  12185098 gcatgactacaggctcagtgctgatagtcctctttattttcttaggacttgagtccttatctcaattctcttctagttcttccagcatctgctcactgcg 12185197  T
Q  101 tcc 103  Q
    |||    
T  12185198 tcc 12185200  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10634614 - 10634521
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||||| ||||||||||  || ||||| ||||  || |||||||||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  10634614 gcatgacttcaggctcagtgctgatagtcctcttcactttcttaggacttgagtcctcatcccagttctcttccagttcttccaacatctgttc 10634521  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 16389089 - 16389027
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagtt 67  Q
    ||||||||||||| |||| |||||| |||||||| |||||||||||||||| | |||||||||    
T  16389089 gactacaggctcaatattagtagtcctctttgctttcttaggacttgagtcttcatcccagtt 16389027  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 8777336 - 8777397
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  8777336 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 8777397  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 18486669 - 18486730
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  18486669 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 18486730  T

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Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 11280588 - 11280537
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  11280588 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 11280537  T

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Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 28322426 - 28322375
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  28322426 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 28322375  T

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Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 39374733 - 39374784
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  39374733 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 39374784  T

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Target: scaffold0747 (Bit Score: 55; Significance: 4e-23; HSPs: 1)
Name: scaffold0747
Description:

Target: scaffold0747; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 4980 - 5078
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcgtcc 103  Q
    |||||||||| |||||||||||||| |||| ||| |||||||||||||||| | |||||||||||| |  |||||||||| |||||| |||||||||||    
T  4980 gactacaggcccagtattggtagtcctcttagctttcttaggacttgagtcttcatcccagttctcttgaagttcttccaacatctgctcactgcgtcc 5078  T

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Target: chr6 (Bit Score: 55; Significance: 4e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 26024339 - 26024441
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcg 100  Q
    |||||||||||||||||||  || ||||| ||||   | ||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||    
T  26024339 gcatgactacaggctcagtgctgatagtcctcttcattttcttaggacttgagtccttatcccaattctcttccagttcttccagcatctgctcactgcg 26024438  T
Q  101 tcc 103  Q
    |||    
T  26024439 tcc 26024441  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 22450926 - 22450854
Alignment:
Q  31 tctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcgtcc 103  Q
    |||| ||| ||||||||||||  |||| |||||||||||| | |||||||||||||||||| |||||||||||    
T  22450926 tcttggctttcttaggacttggttcctcatcccagttctcttccagttcttccagcatctgctcactgcgtcc 22450854  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 27375391 - 27375469
Alignment:
Q  13 gctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    ||||||| ||||||||| ||||| || |||||||||||||||| | |||||||||||| |  || ||||||||||||||    
T  27375391 gctcagtgttggtagtcctctttactttcttaggacttgagtcttcatcccagttctcttcaagctcttccagcatctg 27375469  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 27465748 - 27465826
Alignment:
Q  13 gctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    ||||||| ||||||||| ||||| || |||||||||||||||| | |||||||||||| |  || ||||||||||||||    
T  27465748 gctcagtgttggtagtcctctttactttcttaggacttgagtcttcatcccagttctcttcaagctcttccagcatctg 27465826  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 32309250 - 32309195
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||||||    
T  32309250 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccagcat 32309195  T

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Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 4633527 - 4633582
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    |||||| ||||||| |||||||| | |||||||||||| | || ||||||||||||    
T  4633527 tttgctttcttagggcttgagtcttcatcccagttctcttccaattcttccagcat 4633582  T

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Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 12725036 - 12724985
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  12725036 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 12724985  T

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Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27344344 - 27344395
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  27344344 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 27344395  T

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Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27405084 - 27405135
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  27405084 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 27405135  T

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Target: scaffold0865 (Bit Score: 51; Significance: 9e-21; HSPs: 1)
Name: scaffold0865
Description:

Target: scaffold0865; HSP #1
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 4550 - 4464
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctg 91  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||  ||| | |||||||||||| | |||||||||||| |||||    
T  4550 gactacaggcccagtattggtagtcatctttgctttcttaggacttctgtcttcatcccagttctcttccagttcttccagtatctg 4464  T

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Target: scaffold0199 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20998 - 21064
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagtt 67  Q
    |||||||||||||||||| | |||||||||| |||||| ||||||||||||||||||| ||||||||    
T  20998 gcatgactacaggctcagcagtggtagtcatttttgctttcttaggacttgagtccttgtcccagtt 21064  T

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Target: chr5 (Bit Score: 47; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 31446181 - 31446083
Alignment:
Q  5 gactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttcactgcgtcc 103  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||| | ||||||||| || |  || ||||||| ||| || |||||||||||    
T  31446181 gactacaggctcagtattagtagtcctctttgctttcttaggacttgagtcttcatcccagttttcttgaagctcttccatcatttgctcactgcgtcc 31446083  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 17615371 - 17615323
Alignment:
Q  40 tcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    ||||||| |||||||| | |||||||||||| |||||||||||||||||    
T  17615371 tcttagggcttgagtcttcatcccagttctctttcagttcttccagcat 17615323  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 31356845 - 31356797
Alignment:
Q  40 tcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    ||||||| |||||||| | |||||||||||| |||||||||||||||||    
T  31356845 tcttagggcttgagtcttcatcccagttctctttcagttcttccagcat 31356797  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 17727235 - 17727180
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||||||    
T  17727235 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccagcat 17727180  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 36696011 - 36695956
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcat 88  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||||||    
T  36696011 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccagcat 36695956  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 14449589 - 14449650
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  14449589 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccaacatttgttc 14449650  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 35223788 - 35223727
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  35223788 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 35223727  T

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Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 15767069 - 15767018
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  15767069 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 15767018  T

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Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27044784 - 27044835
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  27044784 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 27044835  T

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Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 37732512 - 37732563
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  37732512 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 37732563  T

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Target: scaffold0906 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0906
Description:

Target: scaffold0906; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2151 - 2082
Alignment:
Q  1 gcatgactacaggctcagtattggtagtcatctttgctctcttaggacttgagtccttatcccagttctc 70  Q
    ||||||||||||||||||| ||| ||||| | ||   | |||||||||||||||||| ||||||||||||    
T  2151 gcatgactacaggctcagtgttgatagtccttttcattttcttaggacttgagtcctcatcccagttctc 2082  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 42868489 - 42868550
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  42868489 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 42868550  T

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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 11007815 - 11007866
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  11007815 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 11007866  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 5835820 - 5835881
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  5835820 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 5835881  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 47616141 - 47616080
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttccagcatctgttc 94  Q
    |||||| ||||||| |||||||| | |||||||||||| | ||||||||||| ||| |||||    
T  47616141 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttccatcatttgttc 47616080  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 3174195 - 3174246
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  3174195 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 3174246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 35398747 - 35398696
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  35398747 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 35398696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 38097676 - 38097727
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  38097676 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 38097727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 45183 - 45132
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  45183 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 45132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 28; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 13696793 - 13696742
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  13696793 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 13696742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 36295572 - 36295623
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  36295572 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 36295623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 28; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 27224034 - 27224085
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  27224034 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 27224085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 35255611 - 35255662
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  35255611 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 35255662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 35266220 - 35266271
Alignment:
Q  33 tttgctctcttaggacttgagtccttatcccagttctccttcagttcttcca 84  Q
    |||||| ||||||| |||||||| | |||||||||||| | |||||||||||    
T  35266220 tttgctttcttagggcttgagtcttcatcccagttctcttccagttcttcca 35266271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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