View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5802-17 (Length: 73)

Name: Solexa-NF5802-17
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5802-17
Solexa-NF5802-17
[»] chr7 (9 HSPs)
chr7 (1-73)||(34232273-34232345)
chr7 (4-73)||(4077849-4077918)
chr7 (1-73)||(45993156-45993228)
chr7 (4-48)||(12308612-12308656)
chr7 (1-73)||(17856310-17856382)
chr7 (7-73)||(18671751-18671817)
chr7 (7-71)||(4344401-4344465)
chr7 (1-73)||(5327344-5327416)
chr7 (1-73)||(41340114-41340186)
[»] chr6 (12 HSPs)
chr6 (4-73)||(649563-649632)
chr6 (4-73)||(17078680-17078749)
chr6 (4-73)||(11060352-11060421)
chr6 (4-73)||(17873316-17873385)
chr6 (1-73)||(19256221-19256293)
chr6 (1-73)||(33640498-33640570)
chr6 (4-73)||(18050939-18051008)
chr6 (1-73)||(503019-503091)
chr6 (7-73)||(4478572-4478638)
chr6 (7-73)||(23065539-23065605)
chr6 (1-73)||(33805361-33805433)
chr6 (7-73)||(13086120-13086186)
[»] chr4 (10 HSPs)
chr4 (4-73)||(53486433-53486502)
chr4 (4-73)||(10562823-10562892)
chr4 (4-73)||(20396163-20396232)
chr4 (4-73)||(42778819-42778888)
chr4 (7-70)||(34975119-34975182)
chr4 (1-73)||(8935655-8935727)
chr4 (1-73)||(19648283-19648355)
chr4 (1-69)||(23657882-23657950)
chr4 (1-73)||(19115017-19115089)
chr4 (13-71)||(29553239-29553297)
[»] chr1 (8 HSPs)
chr1 (6-73)||(10710689-10710756)
chr1 (4-73)||(26721214-26721283)
chr1 (1-73)||(25504481-25504553)
chr1 (4-73)||(28097456-28097525)
chr1 (23-73)||(30110434-30110484)
chr1 (6-73)||(7396214-7396281)
chr1 (1-53)||(11649764-11649816)
chr1 (10-73)||(34853144-34853207)
[»] chr3 (12 HSPs)
chr3 (7-73)||(43121167-43121233)
chr3 (4-73)||(23819145-23819214)
chr3 (1-66)||(48192386-48192451)
chr3 (4-73)||(47537849-47537918)
chr3 (4-67)||(50544810-50544873)
chr3 (4-73)||(46908160-46908229)
chr3 (7-70)||(24926181-24926244)
chr3 (4-50)||(9510356-9510402)
chr3 (4-50)||(9518331-9518377)
chr3 (7-73)||(36709491-36709557)
chr3 (7-73)||(42674932-42674998)
chr3 (7-73)||(21740016-21740082)
[»] chr8 (6 HSPs)
chr8 (4-73)||(17659412-17659481)
chr8 (4-66)||(36157741-36157803)
chr8 (1-73)||(4987552-4987624)
chr8 (4-73)||(45255325-45255394)
chr8 (7-73)||(44082505-44082571)
chr8 (37-73)||(6901490-6901526)
[»] chr5 (8 HSPs)
chr5 (4-73)||(7000277-7000346)
chr5 (4-66)||(20208210-20208272)
chr5 (1-73)||(22094737-22094809)
chr5 (4-71)||(6049804-6049871)
chr5 (4-73)||(588088-588157)
chr5 (1-73)||(30509534-30509606)
chr5 (1-73)||(30549874-30549946)
chr5 (1-73)||(35122193-35122265)
[»] chr2 (7 HSPs)
chr2 (4-73)||(1380663-1380732)
chr2 (4-73)||(11028451-11028520)
chr2 (7-73)||(36804700-36804766)
chr2 (1-73)||(15018258-15018330)
chr2 (2-73)||(25380882-25380953)
chr2 (7-73)||(35488418-35488484)
chr2 (7-48)||(22724932-22724973)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-73)||(182696-182765)
[»] scaffold0179 (2 HSPs)
scaffold0179 (4-70)||(8116-8182)
scaffold0179 (4-70)||(13050-13116)
[»] scaffold0912 (1 HSPs)
scaffold0912 (17-73)||(2376-2432)
[»] scaffold0308 (1 HSPs)
scaffold0308 (1-73)||(17726-17798)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 3e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34232345 - 34232273
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  34232345 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgagttttagtcgaccgttatggcg 34232273  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 4077918 - 4077849
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  4077918 aagtgatgttggaggatgctagttgataggagtggcttttagtatcgagttttagtcgcccgttatggcg 4077849  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45993228 - 45993156
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  45993228 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcg 45993156  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 12308612 - 12308656
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtat 48  Q
    |||||||||||||||||||||||||||||||| | ||||||||||    
T  12308612 aagtggtgttggaggatgctagttgataggagagatttttggtat 12308656  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17856382 - 17856310
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||    || || ||||||| |||||||||||||||||||||||    
T  17856382 gggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcg 17856310  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 18671817 - 18671751
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| ||||||||||    || || ||||||| |||||||||||| ||||||||||    
T  18671817 tggtgttggaggatgttagttgatagagcagggttgtggtatcatgttttagtcgctcgttatggcg 18671751  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 4344465 - 4344401
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatgg 71  Q
    ||||||||||||||||||| |||||| | |||||| |||||| | || ||||| || ||||||||    
T  4344465 tggtgttggaggatgctagatgatagaaatggtttatggtatagggtgttagtggctcgttatgg 4344401  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5327416 - 5327344
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||    ||||| ||||| | ||||||||||||||| |||||||    
T  5327416 gggaaatggtgttggaggatgttagtggatagagaaggtttatggtaccatgttttagtcgcccgatatggcg 5327344  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41340186 - 41340114
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||    ||||| ||||| | ||||||||||||||| |||||||    
T  41340186 gggaaatggtgttggaggatgttagtggatagagaaggtttgtggtaccatgttttagtcgcccgatatggcg 41340114  T

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Target: chr6 (Bit Score: 62; Significance: 2e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 649563 - 649632
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  649563 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgagtcttagtcgcccgttatggcg 649632  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 17078680 - 17078749
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  17078680 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgagtcttagtcgcccgttatggcg 17078749  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 11060352 - 11060421
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||    
T  11060352 aagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagttgcccgttatggcg 11060421  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 17873316 - 17873385
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| |||||||||||    
T  17873316 aagtggtgttggaggatgctagtagataggagtggtttttgatatcgagtcttagtcgtccgttatggcg 17873385  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19256293 - 19256221
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  19256293 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcg 19256221  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33640570 - 33640498
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  33640570 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcg 33640498  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 18050939 - 18051008
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||||  ||||||||    
T  18050939 aagtggtgttggaggatgctagttgataggagtggttttcggtatcaagtcttagtcgccgattatggcg 18051008  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 503019 - 503091
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||| ||| | ||||||||||||||||||||||    
T  503019 gggaaatggtgttggaggatgttagtggataggggtggtttttgatatagagttttagtcgcccgttatggcg 503091  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 4478638 - 4478572
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| |||| ||||||   || || ||||||| |||||||||||||||||||||||    
T  4478638 tggtgttggaggatgttagtggatagggaagggttgtggtatcatgttttagtcgcccgttatggcg 4478572  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 23065539 - 23065605
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||| |||| || ||||||||||    ||||| ||||||| |||||||||||||||||||||||    
T  23065539 tggtgttagaggttgttagttgatagagaaggtttgtggtatcatgttttagtcgcccgttatggcg 23065605  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33805433 - 33805361
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||    || || ||||||| ||||||||||||||| |||||||    
T  33805433 gggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgctatggcg 33805361  T

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Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 13086186 - 13086120
Alignment:
Q  7 tggtgttggaggatgctagttgataggagt-ggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| | || ||||| ||| ||||| |||||| ||||| ||||||||||||||||||    
T  13086186 tggtgttggaggatgttggtagatag-agtaggtttgtggtatagtgttctagtcgcccgttatggcg 13086120  T

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Target: chr4 (Bit Score: 62; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 53486433 - 53486502
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  53486433 aagtggtgttggaggatgctagttgataggaatggtttttggtatcgagttttagtcgcccgttatggcg 53486502  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10562823 - 10562892
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||    
T  10562823 aagtggtgttggaggatgctagtagataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 10562892  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 20396232 - 20396163
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  20396232 aagtggtgttggaggatgctagttgataggagtggattttggtatcgagtctcagtcgcccgttatggcg 20396163  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 42778888 - 42778819
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||    
T  42778888 aagtggtgttggaggatgctaattgataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 42778819  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 34975182 - 34975119
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatg 70  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  34975182 tggtgttggaggatactagttgataggagtggcttttggtatcatgttttagtcgtccgttatg 34975119  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8935727 - 8935655
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||| ||||||||||    
T  8935727 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgctcgttatggcg 8935655  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19648355 - 19648283
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | |||||||||||| |||||||||    
T  19648355 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcctgttatggcg 19648283  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23657950 - 23657882
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttat 69  Q
    ||||| |||||||| |||||| |||| |||||| |||||||||||||| | ||||||||||||||||||    
T  23657950 gggaaatggtgttgaaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttat 23657882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19115089 - 19115017
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| |||||||||||| || |||| |||||| |||| ||||||||| | ||||||||||| ||||||||||    
T  19115089 gggaaatggtgttggaggttgttagtggataggggtggattttggtatagagttttagtcgctcgttatggcg 19115017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 29553239 - 29553297
Alignment:
Q  13 tggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatgg 71  Q
    ||||||||| |||| |||||  |||||||||||||| | ||||||||| ||||||||||    
T  29553239 tggaggatgttagtggatagaggtggtttttggtatagagttttagtcacccgttatgg 29553297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 10710689 - 10710756
Alignment:
Q  6 gtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10710689 gtggtgttggaggatgctagttgataggagtggtttttggtatcgagtcttagtcgcccgttatggcg 10710756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 26721283 - 26721214
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||| |||||||||||    
T  26721283 aagtggtgttggaggatgctagtagataggagtgatttttggtatcgagtcttagtcgtccgttatggcg 26721214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25504481 - 25504553
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||||||||||||||    
T  25504481 gggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcg 25504553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28097456 - 28097525
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  28097456 aagtggtgttggagtatgcttgttgatagtagtgatttgtggtatcgagttttagtcgcccgttatggcg 28097525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 30110434 - 30110484
Alignment:
Q  23 tagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  30110434 tagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 30110484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 7396214 - 7396281
Alignment:
Q  6 gtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||| | ||||||| | |||||||||| ||| | |||||||||||||| |||||||    
T  7396214 gtggtgttggaggatgttggttgatatgggtggtttttgatatagagttttagtcgcccgctatggcg 7396281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11649816 - 11649764
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgt 53  Q
    ||||||||||||||||||||| | ||||||| |  |||||| |||||||||||    
T  11649816 gggaagtggtgttggaggatgttggttgataaggatggtttgtggtatcgtgt 11649764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 34853144 - 34853207
Alignment:
Q  10 tgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||| ||||||||||    ||||| ||||||| ||||||||||||||  |||||||    
T  34853144 tgttggaggatgttagttgatagagaaggtttgtggtatcatgttttagtcgcccaatatggcg 34853207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 43121167 - 43121233
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43121167 tggtgttggaggatgcttgttgataggagtggtttttggtatcgagttttagtcgcccgttatggcg 43121233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 23819214 - 23819145
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  23819214 aagtggtgttggaggatgcttgttgataggagtggtttttggtatcgagtttccgtcgcccgttatggcg 23819145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48192451 - 48192386
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgt 66  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  48192451 gggaagtggtgttggaggatgctagttgataggagtggcttttggtatcgagttttagtcgtccgt 48192386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 47537918 - 47537849
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||    
T  47537918 aagtgttgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgtaatggcg 47537849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 50544873 - 50544810
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgtt 67  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||    
T  50544873 aagtggtgttggaggatgcttgttgataggagtggtttttattatcgagttttagtcgcccgtt 50544810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 46908160 - 46908229
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||| |||||||||||| ||||| | |||||||||||||||| | ||||||| ||||||||| ||||    
T  46908160 aagtggtcttggaggatgcttgttgacatgagtggtttttggtatagagttttagccgcccgttacggcg 46908229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 24926181 - 24926244
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatg 70  Q
    ||||||||||||||| |||| |||||    ||||| ||||||||||||||||||||||||||||    
T  24926181 tggtgttggaggatgttagtggatagagaaggtttgtggtatcgtgttttagtcgcccgttatg 24926244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 9510402 - 9510356
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcg 50  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  9510402 aagtggtgttggaggatgttagttaatagaggtggtttttggtatcg 9510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 9518377 - 9518331
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcg 50  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  9518377 aagtggtgttggaggatgttagttaatagaggtggtttttggtatcg 9518331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 36709557 - 36709491
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| ||||||| ||    || || ||||||| |||||||||||||||||||||||    
T  36709557 tggtgttggaggatgttagttgacagagaagggttgtggtatcatgttttagtcgcccgttatggcg 36709491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 42674932 - 42674998
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| ||||||||||    || || |||||||  ||||||||||||||||||||||    
T  42674932 tggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcg 42674998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 21740016 - 21740082
Alignment:
Q  7 tggtgttggaggatgctagttgataggagt-ggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| | || ||||| ||| ||||| |||||| ||||| ||||||||||||||||||    
T  21740016 tggtgttggaggatgttggtagatag-agtaggtttatggtattgtgttctagtcgcccgttatggcg 21740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 17659481 - 17659412
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  17659481 aagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 17659412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 36157803 - 36157741
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgt 66  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||    
T  36157803 aagtggtgttggaggatgcttgttgataggagtggtttgtggtattgagttttagtcgcccgt 36157741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4987552 - 4987624
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| ||| || |||||||||||||| | ||||||||||||||||||||||    
T  4987552 gggaaatggtgttggaggatgttagtggatgggggtggtttttggtatagagttttagtcgcccgttatggcg 4987624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 45255325 - 45255394
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||| || |||||||||||||||| |||||  |||| || |||||||||| ||||||||    
T  45255325 aagtgatgttggaggttgttagttgataggagtggcttttgccatcgagtcttagtcgcccattatggcg 45255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 44082505 - 44082571
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| ||||||||||    || || |||||||  ||||||||||||||||||||||    
T  44082505 tggtgttggaggatgttagttgatagagaagggttgtggtatcaggttttagtcgcccgttatggcg 44082571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 6901526 - 6901490
Alignment:
Q  37 ggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  6901526 ggtttgtggtatcatgttttagtcgcccgttatggcg 6901490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 7000277 - 7000346
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  7000277 aagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 7000346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 20208210 - 20208272
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgt 66  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  20208210 aagtggtgttggaggatgctagtagataggagtggtttttggtatcgagtcttagtcgcccgt 20208272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22094737 - 22094809
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||| | ||||||||||| ||||||||||    
T  22094737 gggaagtggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgctcgttatggcg 22094809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 6049871 - 6049804
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatgg 71  Q
    |||||| ||| |||| || |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  6049871 aagtggggttagaggttgttagttgataggagtggcttttggtatcgagtcttagtcgcccgttatgg 6049804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 588157 - 588088
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||||||| ||||||||  ||||||| |||||| | || ||||| ||| | |||||||    
T  588157 aagtggtgttggaggatgctggttgatagatgtggtttatggtatagggtgttagttgccagatatggcg 588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30509534 - 30509606
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| |||||||||||| || |||| |||||   ||| || |||||||  ||||||||||||||||||||||    
T  30509534 gggaaatggtgttggaggttgttagtagatagagatggcttgtggtatcaggttttagtcgcccgttatggcg 30509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30549874 - 30549946
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| |||||||||||| || |||| |||||   ||| || |||||||  ||||||||||||||||||||||    
T  30549874 gggaaatggtgttggaggttgttagtagatagagatggcttgtggtatcaggttttagtcgcccgttatggcg 30549946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35122193 - 35122265
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||||||||| |||| |||||    || || |||||||  ||||||||||||||||||||||    
T  35122193 gggaaatggtgttggaggatgttagtggatagagaaggattgtggtatcaggttttagtcgcccgttatggcg 35122265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 1380732 - 1380663
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  1380732 aagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggcg 1380663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 11028520 - 11028451
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||    
T  11028520 aagtggtgttggaggatgcttgttgataggagtggtttgtggtaccgagttttagtcgcccgttacggcg 11028451  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 36804766 - 36804700
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||| |||| || ||    ||||| |||||||||||||||||||||||||||||||    
T  36804766 tggtgttggaggatgttagtagagagagaaggtttgtggtatcgtgttttagtcgcccgttatggcg 36804700  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15018330 - 15018258
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| |||||||||||| ||  ||| |||||| |||| ||||||||| | ||||||||||| ||||||||||    
T  15018330 gggaaatggtgttggaggttgtcagtggataggggtggattttggtatagagttttagtcgctcgttatggcg 15018258  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 25380882 - 25380953
Alignment:
Q  2 ggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||| ||||| | ||||||  |||| |||||| |||||||||||||| |  |||||||||||||||||||||    
T  25380882 ggaaatggtgctagaggatattagtggataggggtggtttttggtatagaattttagtcgcccgttatggcg 25380953  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 35488484 - 35488418
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||| || ||||||||||    || || ||||||| |||||||||||||||||||||||    
T  35488484 tggtgttggaggttgttagttgatagagaagggttgtggtatcatgttttagtcgcccgttatggcg 35488418  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 22724932 - 22724973
Alignment:
Q  7 tggtgttggaggatgctagttgataggagtggtttttggtat 48  Q
    ||||||||||||||| |||| |||||| ||||||||||||||    
T  22724932 tggtgttggaggatgttagtggataggggtggtttttggtat 22724973  T

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Target: scaffold0007 (Bit Score: 54; Significance: 1e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 182765 - 182696
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  182765 aagtggtgttggaggatgctagttgataggagtggattttggtatcgagtctcagtcgcccgttatggcg 182696  T

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Target: scaffold0179 (Bit Score: 51; Significance: 6e-21; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 8182 - 8116
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatg 70  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||    
T  8182 aagtggtgttggaggatgatagtagataggagtggtttttggtatcgagtcttagtcgcccgttatg 8116  T

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Target: scaffold0179; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 13116 - 13050
Alignment:
Q  4 aagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatg 70  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||    
T  13116 aagtggtgttggaggatgatagtagataggagtggtttttggtatcgagtcttagtcgcccgttatg 13050  T

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Target: scaffold0912 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 2376 - 2432
Alignment:
Q  17 ggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    |||||||||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  2376 ggatgctagttgataggagtgtgttttggtatcgagtcttagtcgcccgttatggcg 2432  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17798 - 17726
Alignment:
Q  1 gggaagtggtgttggaggatgctagttgataggagtggtttttggtatcgtgttttagtcgcccgttatggcg 73  Q
    ||||| ||||||||| ||||| |||| |||||    || || ||||||| |||||||||||||||||||||||    
T  17798 gggaaatggtgttggtggatgttagtggatagagaaggattgtggtatcatgttttagtcgcccgttatggcg 17726  T

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