View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5802-7 (Length: 130)
Name: Solexa-NF5802-7
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5802-7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 9e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34133646 - 34133517
Alignment:
| Q |
1 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
100 |
Q |
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| T |
34133646 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
34133547 |
T |
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| Q |
101 |
tggtgaaggagattggaagtgcaagcaagg |
130 |
Q |
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| T |
34133546 |
tggtgaaggagattggaagtgcaagcaagg |
34133517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34137557 - 34137430
Alignment:
| Q |
1 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
100 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||| |
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| T |
34137557 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
34137458 |
T |
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| Q |
101 |
tggtgaaggagattggaagtgcaagcaa |
128 |
Q |
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| T |
34137457 |
tagtgaaggaaattggaagtgcatgcaa |
34137430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34141220 - 34141093
Alignment:
| Q |
1 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
100 |
Q |
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||||||||||||||| |||| ||||||||||| ||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||||| || |
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| T |
34141220 |
agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct |
34141121 |
T |
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| Q |
101 |
tggtgaaggagattggaagtgcaagcaa |
128 |
Q |
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| T |
34141120 |
tagtcaaggagattggaagtgcatgcaa |
34141093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34127373 - 34127244
Alignment:
| Q |
1 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
100 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||||| ||||| | ||| ||||| |||||| | || |
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| T |
34127373 |
agaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagct |
34127274 |
T |
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| Q |
101 |
tggtgaaggagattggaagtgcaagcaagg |
130 |
Q |
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|||||||| |||||||||||||| |||||| |
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| T |
34127273 |
tggtgaagaagattggaagtgcatgcaagg |
34127244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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