View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5803-1 (Length: 151)
Name: Solexa-NF5803-1
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5803-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 1e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 31648788 - 31648645
Alignment:
| Q |
8 |
agaactttccattttcataaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
107 |
Q |
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| T |
31648788 |
agaactttccattttcaaaaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
31648689 |
T |
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| Q |
108 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagc |
151 |
Q |
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| T |
31648688 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagc |
31648645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 31700660 - 31700517
Alignment:
| Q |
8 |
agaactttccattttcataaccttttcaatgattggctccaaatccaataaggtgcaattttgttctccttgatactccaccatgaatctaagtagttgt |
107 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31700660 |
agaactttccattttcaaaaccttttcaatgattggctccaaatccaataaggtgcaattttgctctccttgatactccaccatgaatctaagtagttgt |
31700561 |
T |
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| Q |
108 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagc |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31700560 |
tcctttgacatgtgattctcaccatttgcaaacttggaaaaagc |
31700517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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