View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5803-12 (Length: 50)
Name: Solexa-NF5803-12
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5803-12 |
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Alignment Details
Target: chr7 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 40945562 - 40945522
Alignment:
| Q |
8 |
tcaacctcttttggcaagaggctcttcaactcttcctcaaa |
48 |
Q |
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| T |
40945562 |
tcaacctcttttggcaagaggctcttcaactcttcctcaaa |
40945522 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 40959527 - 40959487
Alignment:
| Q |
8 |
tcaacctcttttggcaagaggctcttcaactcttcctcaaa |
48 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959527 |
tcaacctcttttggcaagaggctcttcaactcttcctcaaa |
40959487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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