View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5803-4 (Length: 128)

Name: Solexa-NF5803-4
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5803-4
Solexa-NF5803-4
[»] chr5 (3 HSPs)
chr5 (8-66)||(40372127-40372185)
chr5 (8-60)||(24565596-24565648)
chr5 (8-60)||(24606632-24606684)
[»] chr7 (4 HSPs)
chr7 (8-60)||(43660352-43660404)
chr7 (21-60)||(30580677-30580716)
chr7 (8-60)||(36611467-36611519)
chr7 (8-60)||(41358334-41358386)
[»] chr2 (4 HSPs)
chr2 (8-60)||(20606309-20606361)
chr2 (8-60)||(23458597-23458649)
chr2 (8-62)||(40583773-40583827)
chr2 (8-60)||(38138700-38138752)
[»] chr4 (2 HSPs)
chr4 (8-66)||(45394702-45394760)
chr4 (11-59)||(2460873-2460921)
[»] chr6 (1 HSPs)
chr6 (8-60)||(16718967-16719019)
[»] chr8 (1 HSPs)
chr8 (8-60)||(22632345-22632397)
[»] chr1 (1 HSPs)
chr1 (8-53)||(26240851-26240896)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 40372185 - 40372127
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaacgttta 66  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40372185 aattaagttcctcaccggtggactatgaataaaataacgttagatttaattaacgttta 40372127  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24565596 - 24565648
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    |||||| |||||||||||||||| ||||| |||||| | ||||||||||||||    
T  24565596 aattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaa 24565648  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24606632 - 24606684
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    |||||| |||||||||||||||| ||||| |||||| | ||||||||||||||    
T  24606632 aattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaa 24606684  T

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Target: chr7 (Bit Score: 49; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 43660404 - 43660352
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43660404 aattaagtccctcaccggtggaccatgaataaaataacgttagatttaattaa 43660352  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 30580677 - 30580716
Alignment:
Q  21 accggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30580677 accggtggactatgaataaaataacgttagatttaattaa 30580716  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 36611519 - 36611467
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    |||||| || ||||||||||||| ||||| |||||| | ||||||||||||||    
T  36611519 aattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaa 36611467  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 41358334 - 41358386
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||| ||||| ||||||||||||  ||| |||| ||||||    
T  41358334 aattaagtccctcaccgatggaccatgaataaaatatggttggattaaattaa 41358386  T

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Target: chr2 (Bit Score: 45; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 20606309 - 20606361
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  20606309 aattaagtccctcaccgatggactgtgaataaaataacgttagatttaattaa 20606361  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 23458649 - 23458597
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||||| ||| || || ||||||||||| |||||||||||    
T  23458649 aattaagtccctcaccggtagaccattaaaaaaataacgttggatttaattaa 23458597  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 40583773 - 40583827
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaacg 62  Q
    |||||||||| ||| || |||||  ||||||||||||| ||||||||||||||||    
T  40583773 aattaagtccttcatcgatggaccgtgaataaaataacattagatttaattaacg 40583827  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38138752 - 38138700
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||| ||||||  |||||||||||| | || |||||||||||    
T  38138752 aattaagtccctcactggtggatcatgaataaaataccatttgatttaattaa 38138700  T

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Target: chr4 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 45394760 - 45394702
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaacgttta 66  Q
    |||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||    
T  45394760 aattaagtacctcgtcgatggactatgaataaaataacgttagatttaattaacgttta 45394702  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 2460873 - 2460921
Alignment:
Q  11 taagtccctcaccggtggactatgaataaaataacgttagatttaatta 59  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||||||||    
T  2460873 taagtccctcaccagtggaccatgaataaaacaacgttaggtttaatta 2460921  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 16719019 - 16718967
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  16719019 aattaagtccctcaccggtggaccatgaacaaaatatcgttagatttaattaa 16718967  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22632345 - 22632397
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatttaattaa 60  Q
    ||||||||||||||||||||||| ||||| | || | ||||||||||||||||    
T  22632345 aattaagtccctcaccggtggaccatgaaaataaaaccgttagatttaattaa 22632397  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 26240896 - 26240851
Alignment:
Q  8 aattaagtccctcaccggtggactatgaataaaataacgttagatt 53  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||    
T  26240896 aattaagtccctcaccggtggaccatgaagaaaataccgtttgatt 26240851  T

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