View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5803-6 (Length: 122)
Name: Solexa-NF5803-6
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5803-6 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] scaffold0107 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0023 (3 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 82; Significance: 4e-39; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 385300 - 385421
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggttttgaaacttaaatgacggttccttctcgtttgatga |
100 |
Q |
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||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||| ||||||| | |
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| T |
385300 |
gagatgaatatcataagggaaagggacgctatttatagtgaagtaaggaagtttaaaagtggttttgaaactcaaacgacggttccttcttgtttgatca |
385399 |
T |
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| Q |
101 |
taaaaaatcagatgaagacacg |
122 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
385400 |
tcaaaaatcagatgaagacacg |
385421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 8e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 21299516 - 21299634
Alignment:
| Q |
4 |
atgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggttttgaaacttaaatgacggttccttctcgtttgatgataa |
103 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| || || | |
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| T |
21299516 |
atgaacattacaagggaaagggacactatttatagtgaagtaaggaagttgaaaagagg-tttgaaacttaaacgacggttccttctcatttaatcatca |
21299614 |
T |
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| Q |
104 |
aaaatc-agatgaagacacg |
122 |
Q |
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|| ||| ||||||||||||| |
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| T |
21299615 |
aatatcaagatgaagacacg |
21299634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22799410 - 22799281
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggt--------tttgaaacttaaatgacggttccttctcg |
92 |
Q |
| |
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|||||||||| |||| | |||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||| |||| | |
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| T |
22799410 |
gagatgaataacacaagacaaagggactatatttatagtgaaataaggaagttgaaaagtggttttttctctttgaaactcaaacgacggttctttcttg |
22799311 |
T |
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| Q |
93 |
tttgatgataaaaaatcagatgaagacacg |
122 |
Q |
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|||||| || ||| |||||||||||||||| |
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| T |
22799310 |
tttgatcatcaaagatcagatgaagacacg |
22799281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 22689077 - 22688991
Alignment:
| Q |
4 |
atgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggttttgaaacttaaatgacggttccttctc |
91 |
Q |
| |
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||||| || ||| ||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| |||||| |
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| T |
22689077 |
atgaacattacaagggaaagggacgttatttatagtggagtaaggaagttg-aaagaagttttgaaacttaagcgacggtttcttctc |
22688991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 63; Significance: 8e-28; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 58413 - 58534
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggttttgaaacttaaatgacggttccttctcgtttgatga |
100 |
Q |
| |
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|||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| | |
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| T |
58413 |
gagatgaacattacaaaggaaagggacactatttatagcgaagtaaggaagttgaaaagagg-tttgaaacttaaacgacggttccttctcatttgatca |
58511 |
T |
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| Q |
101 |
taaaaaatca-gatgaagacacg |
122 |
Q |
| |
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| ||| || | |||||||||||| |
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| T |
58512 |
tcaaatattaggatgaagacacg |
58534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 60; Significance: 5e-26; HSPs: 2)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24491 - 24578
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggttt-tgaaacttaaatgacggttcct |
87 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
24491 |
gagatgaatatcacaagggaaaggaacactatttatagtgaagaaaggaagttgaaaagtggtttctgaaacttaaacgacggttcct |
24578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9717 - 9759
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaag |
43 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
9717 |
gagatgaatatcacaagggaaaggaacactatttatagtgaag |
9759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 24922084 - 24922188
Alignment:
| Q |
20 |
aaagggacactatttatagtgaagtaaggaagttgaaaagaggt--tttgaaacttaaatgacggttccttctcgtttgatgataaaaaatcagatgaag |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||| |||||||| | | | ||||| || ||||||||||||||| |
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| T |
24922084 |
aaagggacactatttatagtgaagtagggaagttgaaaagtggttctttgaaactcaaacgacggttcttctttgcttgatcatcaaaaatcagatgaag |
24922183 |
T |
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| Q |
118 |
acacg |
122 |
Q |
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||||| |
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| T |
24922184 |
acacg |
24922188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 8698 - 8789
Alignment:
| Q |
31 |
atttatagtgaagtaaggaagttgaaaagaggttttgaaacttaaatgacggttccttctcgtttgatgataaaaaatca-gatgaagacacg |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||| |||| |||||| || |||||||| |||||||||||| |
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| T |
8698 |
atttatagtgaagtaaggaaattgaaaagagg-tttgaaacttaaacgactgttccctctcatttgatcatcaaaaatcaggatgaagacacg |
8789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 69754 - 69790
Alignment:
| Q |
30 |
tatttatagtgaagtaaggaagttgaaaagaggtttt |
66 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
69754 |
tatttatagtgaaataaggaagttgaaaagtggtttt |
69790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 78932 - 78968
Alignment:
| Q |
30 |
tatttatagtgaagtaaggaagttgaaaagaggtttt |
66 |
Q |
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|
||||||||||||| |||||||||||||||| |||||| |
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|
| T |
78932 |
tatttatagtgaaataaggaagttgaaaagtggtttt |
78968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 127260 - 127195
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggtttt |
66 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||| |||||| |
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|
| T |
127260 |
gagatgaatatcacaagacaaagggacgatatttatagtgaaataaggaagttgaaaagtggtttt |
127195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12493232 - 12493273
Alignment:
| Q |
18 |
ggaaagggacactatttatagtgaagtaaggaagttgaaaag |
59 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
12493232 |
ggaaagggacactatttataatgaagtaaggaagttgaaaag |
12493273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12026999 - 12026940
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaaga |
60 |
Q |
| |
|
||||||||||| | | | || ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12026999 |
gagatgaatattaaaagagagaggaacactatttatagtgaagtaaagaagttgaaaaga |
12026940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1773 - 1644
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggt--------tttgaaacttaaatgacggttccttctcg |
92 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||| | || | |
|
|
| T |
1773 |
gagatgaataacacaagacaaagggactatatttatagtgaaataaggaagttgaaaagtggttttttctctttgaaactcaaacgacggttcttccttg |
1674 |
T |
|
| Q |
93 |
tttgatgataaaaaatcagatgaagacacg |
122 |
Q |
| |
|
|||||| || ||| |||||||||||||||| |
|
|
| T |
1673 |
tttgatcatcaaagatcagatgaagacacg |
1644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14741581 - 14741451
Alignment:
| Q |
1 |
gagatgaatatcacaggggaaagggacactatttatagtgaagtaaggaagttgaaaagaggt---------tttgaaacttaaatgacggttccttctc |
91 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||||||||||| || ||||||||||||| ||| ||||||||| ||| |||||||| | || |
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|
| T |
14741581 |
gagatgaatagcacaagacaaagggactatatttatagtgaaatagggaagttgaaaagtggtttttttctctttgaaactcaaacgacggttcttcctt |
14741482 |
T |
|
| Q |
92 |
gtttgatgataaaaaatcagatgaagacacg |
122 |
Q |
| |
|
||||||| || ||| |||||||||||||||| |
|
|
| T |
14741481 |
gtttgatcatcaaagatcagatgaagacacg |
14741451 |
T |
|
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