View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5803-7 (Length: 80)

Name: Solexa-NF5803-7
Description: NF5803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5803-7
Solexa-NF5803-7
[»] chr7 (1 HSPs)
chr7 (8-80)||(36067615-36067688)
[»] chr6 (4 HSPs)
chr6 (8-80)||(17732568-17732641)
chr6 (8-80)||(6009181-6009254)
chr6 (8-80)||(15347725-15347798)
chr6 (8-61)||(30709793-30709846)
[»] chr3 (3 HSPs)
chr3 (8-80)||(50838011-50838084)
chr3 (8-80)||(54560326-54560399)
chr3 (8-61)||(47470994-47471046)
[»] chr1 (1 HSPs)
chr1 (8-78)||(47445536-47445607)
[»] chr5 (2 HSPs)
chr5 (8-80)||(5348016-5348089)
chr5 (8-61)||(36429582-36429635)
[»] chr2 (3 HSPs)
chr2 (8-80)||(4592918-4592991)
chr2 (8-61)||(10255973-10256026)
chr2 (23-61)||(10256012-10256050)
[»] chr4 (1 HSPs)
chr4 (8-61)||(27455220-27455273)
[»] scaffold0102 (1 HSPs)
scaffold0102 (8-78)||(32652-32723)
[»] chr8 (3 HSPs)
chr8 (8-78)||(14790970-14791041)
chr8 (8-61)||(20112059-20112112)
chr8 (8-49)||(18308868-18308909)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 36067615 - 36067688
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  36067615 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaga 36067688  T

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Target: chr6 (Bit Score: 58; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 17732641 - 17732568
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  17732641 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaga 17732568  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 6009254 - 6009181
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  6009254 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaaga 6009181  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 15347725 - 15347798
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||    
T  15347725 gtttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaaga 15347798  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 30709793 - 30709846
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30709793 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 30709846  T

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Target: chr3 (Bit Score: 58; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 50838084 - 50838011
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  50838084 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaga 50838011  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 54560326 - 54560399
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  |||||||||||||||    
T  54560326 gtttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaaga 54560399  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 47470994 - 47471046
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47470994 gtttgttaccttcttgaattaatcaacaacaaccctttggaa-tcatcaacaac 47471046  T

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Target: chr1 (Bit Score: 56; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 47445607 - 47445536
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||    
T  47445607 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaa 47445536  T

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Target: chr5 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 5348016 - 5348089
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||    
T  5348016 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaaga 5348089  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 36429582 - 36429635
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  36429582 gtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaac 36429635  T

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Target: chr2 (Bit Score: 54; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 4592918 - 4592991
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaaga 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||    
T  4592918 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaaga 4592991  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10255973 - 10256026
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10255973 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 10256026  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 10256012 - 10256050
Alignment:
Q  23 gaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaac 10256050  T

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Target: chr4 (Bit Score: 50; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 27455220 - 27455273
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27455220 gtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac 27455273  T

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Target: scaffold0102 (Bit Score: 48; Significance: 4e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 32652 - 32723
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaa 78  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| ||||||    
T  32652 gtttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaa 32723  T

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Target: chr8 (Bit Score: 48; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 14790970 - 14791041
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac-gagtgaataacagaaaa 78  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||  |||||||||||||    
T  14790970 gtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaa 14791041  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 20112112 - 20112059
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaactcatcaacaac 61  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  20112112 gtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaac 20112059  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 18308868 - 18308909
Alignment:
Q  8 gtttgttaccttcttgaattaatcaacaacaaccctttggaa 49  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  18308868 gtttgttaccatcttgaattaatcaacaacaactctttggaa 18308909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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