View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5804-1 (Length: 299)

Name: Solexa-NF5804-1
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5804-1
Solexa-NF5804-1
[»] chr6 (11 HSPs)
chr6 (112-232)||(6919746-6919866)
chr6 (91-234)||(9285645-9285789)
chr6 (112-232)||(776118-776239)
chr6 (112-212)||(9763032-9763133)
chr6 (91-149)||(1195350-1195408)
chr6 (112-232)||(9763050-9763171)
chr6 (92-127)||(1368477-1368512)
chr6 (175-234)||(29889450-29889509)
chr6 (175-234)||(34244996-34245055)
chr6 (112-146)||(15299437-15299471)
chr6 (91-127)||(28918164-28918200)
[»] chr3 (38 HSPs)
chr3 (112-234)||(44692820-44692943)
chr3 (112-232)||(44436258-44436379)
chr3 (112-232)||(9129344-9129465)
chr3 (112-232)||(9137451-9137572)
chr3 (112-232)||(5415821-5415942)
chr3 (92-194)||(331993-332096)
chr3 (112-213)||(31070425-31070527)
chr3 (92-171)||(25655315-25655394)
chr3 (112-171)||(27251956-27252015)
chr3 (113-194)||(28092253-28092335)
chr3 (153-232)||(49457343-49457423)
chr3 (92-234)||(46429414-46429557)
chr3 (124-235)||(46672772-46672878)
chr3 (91-234)||(28092212-28092356)
chr3 (112-171)||(39110432-39110491)
chr3 (112-194)||(46429434-46429517)
chr3 (91-149)||(332059-332117)
chr3 (91-149)||(54761561-54761619)
chr3 (96-232)||(27251916-27252053)
chr3 (112-234)||(31070444-31070567)
chr3 (175-237)||(9129446-9129508)
chr3 (175-237)||(9137553-9137615)
chr3 (94-140)||(27485474-27485520)
chr3 (112-185)||(39215885-39215959)
chr3 (175-232)||(5415783-5415840)
chr3 (112-232)||(44692860-44692981)
chr3 (169-234)||(47284322-47284387)
chr3 (93-149)||(38506873-38506929)
chr3 (175-234)||(36398004-36398063)
chr3 (112-167)||(47284292-47284347)
chr3 (175-234)||(47767430-47767489)
chr3 (91-149)||(2104751-2104809)
chr3 (91-149)||(55460357-55460415)
chr3 (91-148)||(9007453-9007510)
chr3 (112-149)||(46672800-46672837)
chr3 (176-232)||(671635-671691)
chr3 (149-228)||(21307520-21307600)
chr3 (175-235)||(31189412-31189472)
[»] chr5 (38 HSPs)
chr5 (94-232)||(40643838-40643976)
chr5 (112-232)||(9764338-9764459)
chr5 (112-232)||(15373998-15374119)
chr5 (112-232)||(2316378-2316500)
chr5 (112-230)||(32389974-32390093)
chr5 (119-231)||(20523178-20523291)
chr5 (112-212)||(32470902-32471003)
chr5 (145-231)||(3563278-3563365)
chr5 (112-234)||(40809379-40809502)
chr5 (149-235)||(22766949-22767036)
chr5 (92-232)||(34982216-34982348)
chr5 (91-149)||(15270849-15270907)
chr5 (91-149)||(22305111-22305169)
chr5 (91-148)||(2550327-2550384)
chr5 (112-234)||(20523131-20523254)
chr5 (115-169)||(16515045-16515099)
chr5 (116-232)||(32390014-32390131)
chr5 (92-149)||(33146191-33146248)
chr5 (156-235)||(26281262-26281342)
chr5 (92-140)||(34105089-34105137)
chr5 (112-234)||(9764376-9764499)
chr5 (112-234)||(15373958-15374081)
chr5 (112-234)||(23091961-23092083)
chr5 (155-232)||(16515099-16515177)
chr5 (91-149)||(28489480-28489538)
chr5 (149-234)||(37722880-37722966)
chr5 (175-232)||(32250111-32250167)
chr5 (175-230)||(2721573-2721628)
chr5 (112-167)||(6634053-6634107)
chr5 (93-148)||(12064464-12064519)
chr5 (175-234)||(22303883-22303942)
chr5 (112-163)||(28828417-28828468)
chr5 (116-235)||(2316420-2316540)
chr5 (175-232)||(15804322-15804379)
chr5 (175-232)||(23092064-23092121)
chr5 (177-230)||(28828369-28828422)
chr5 (149-232)||(25935276-25935360)
chr5 (149-232)||(40090400-40090484)
[»] chr8 (32 HSPs)
chr8 (7-89)||(45314904-45314986)
chr8 (91-234)||(14799978-14800121)
chr8 (112-234)||(17110907-17111030)
chr8 (112-234)||(3853614-3853737)
chr8 (112-234)||(3858072-3858195)
chr8 (114-235)||(33902664-33902786)
chr8 (143-230)||(4156236-4156324)
chr8 (112-222)||(13404865-13404976)
chr8 (91-149)||(30444941-30444999)
chr8 (91-148)||(7202864-7202921)
chr8 (91-140)||(42739948-42739997)
chr8 (92-138)||(7202923-7202969)
chr8 (92-149)||(34008799-34008856)
chr8 (92-148)||(29611388-29611444)
chr8 (148-238)||(11744717-11744808)
chr8 (112-194)||(30435284-30435365)
chr8 (92-232)||(42711304-42711439)
chr8 (112-232)||(17110869-17110990)
chr8 (175-232)||(31807409-31807465)
chr8 (149-232)||(23011734-23011818)
chr8 (112-164)||(38573433-38573485)
chr8 (175-234)||(24044958-24045017)
chr8 (95-149)||(26520447-26520501)
chr8 (169-235)||(37268103-37268169)
chr8 (175-212)||(8689152-8689189)
chr8 (188-245)||(27322688-27322745)
chr8 (175-232)||(40046804-40046861)
chr8 (175-235)||(515558-515618)
chr8 (91-127)||(1088325-1088361)
chr8 (112-148)||(33986042-33986078)
chr8 (91-127)||(36103100-36103136)
chr8 (175-235)||(44889351-44889411)
[»] chr1 (45 HSPs)
chr1 (91-234)||(45565392-45565536)
chr1 (112-234)||(4038113-4038236)
chr1 (112-232)||(15034659-15034780)
chr1 (91-201)||(5474416-5474527)
chr1 (116-230)||(28745799-28745913)
chr1 (91-194)||(17502197-17502301)
chr1 (112-234)||(34756425-34756548)
chr1 (112-194)||(23536105-23536188)
chr1 (116-232)||(27804307-27804424)
chr1 (112-194)||(37214857-37214939)
chr1 (96-232)||(23536067-23536204)
chr1 (112-232)||(38277415-38277536)
chr1 (92-231)||(32572940-32573080)
chr1 (112-234)||(15034697-15034820)
chr1 (154-213)||(29446769-29446828)
chr1 (112-232)||(50005079-50005200)
chr1 (91-230)||(40264047-40264187)
chr1 (115-234)||(44410309-44410429)
chr1 (94-162)||(47074156-47074223)
chr1 (112-167)||(27935551-27935606)
chr1 (91-149)||(15245459-15245517)
chr1 (112-169)||(30190200-30190257)
chr1 (112-194)||(32572960-32573043)
chr1 (112-194)||(40264068-40264151)
chr1 (149-234)||(24273209-24273295)
chr1 (91-149)||(37447357-37447415)
chr1 (112-232)||(4038075-4038196)
chr1 (149-230)||(28632575-28632656)
chr1 (92-149)||(32128048-32128105)
chr1 (143-194)||(15245480-15245532)
chr1 (91-151)||(34007417-34007477)
chr1 (97-149)||(44571225-44571276)
chr1 (149-235)||(47165201-47165288)
chr1 (175-234)||(30190238-30190297)
chr1 (146-235)||(6470672-6470762)
chr1 (178-232)||(8224768-8224822)
chr1 (92-138)||(17502275-17502321)
chr1 (92-150)||(34007358-34007416)
chr1 (175-232)||(26501095-26501152)
chr1 (92-149)||(27935504-27935560)
chr1 (112-149)||(34756465-34756502)
chr1 (92-137)||(37214914-37214959)
chr1 (91-148)||(50471767-50471824)
chr1 (91-127)||(15034658-15034694)
chr1 (91-127)||(26501117-26501153)
[»] chr2 (26 HSPs)
chr2 (91-228)||(11684603-11684732)
chr2 (91-234)||(10244175-10244319)
chr2 (112-235)||(784831-784955)
chr2 (98-194)||(11824704-11824801)
chr2 (112-234)||(14365738-14365860)
chr2 (112-234)||(41461553-41461676)
chr2 (112-213)||(11716446-11716539)
chr2 (112-194)||(14537237-14537320)
chr2 (92-232)||(14537199-14537340)
chr2 (92-194)||(3345783-3345887)
chr2 (110-232)||(27033490-27033613)
chr2 (116-196)||(14954308-14954390)
chr2 (175-234)||(11716406-11716465)
chr2 (91-146)||(41585691-41585746)
chr2 (94-148)||(11824765-11824819)
chr2 (92-149)||(8736439-8736496)
chr2 (175-232)||(14365700-14365757)
chr2 (175-232)||(17180297-17180354)
chr2 (92-149)||(20935725-20935781)
chr2 (94-138)||(3345765-3345809)
chr2 (149-232)||(10480119-10480203)
chr2 (151-231)||(30751338-30751418)
chr2 (94-149)||(11607241-11607296)
chr2 (149-212)||(39630245-39630308)
chr2 (112-149)||(27033528-27033565)
chr2 (91-127)||(27033489-27033525)
[»] chr4 (37 HSPs)
chr4 (112-230)||(7352814-7352933)
chr4 (91-234)||(14982278-14982421)
chr4 (112-213)||(28845890-28845992)
chr4 (93-231)||(4441338-4441468)
chr4 (112-201)||(857270-857360)
chr4 (133-234)||(36455905-36456007)
chr4 (112-235)||(1107090-1107214)
chr4 (112-194)||(11041005-11041088)
chr4 (112-234)||(15660221-15660344)
chr4 (112-235)||(41498486-41498611)
chr4 (92-230)||(26250911-26251050)
chr4 (112-234)||(10128012-10128135)
chr4 (112-171)||(49111374-49111433)
chr4 (112-213)||(42844562-42844664)
chr4 (175-235)||(49111414-49111474)
chr4 (112-234)||(857277-857400)
chr4 (149-235)||(31473846-31473933)
chr4 (94-149)||(42775625-42775680)
chr4 (112-157)||(467879-467923)
chr4 (130-194)||(12914054-12914119)
chr4 (112-232)||(15660183-15660304)
chr4 (104-148)||(27284661-27284705)
chr4 (94-162)||(46724195-46724263)
chr4 (92-148)||(56339151-56339207)
chr4 (112-194)||(26250947-26251030)
chr4 (92-162)||(32724930-32725003)
chr4 (91-146)||(54566189-54566244)
chr4 (91-149)||(21012574-21012632)
chr4 (175-232)||(1112605-1112662)
chr4 (169-234)||(4896646-4896711)
chr4 (112-149)||(4896716-4896753)
chr4 (175-232)||(7352914-7352971)
chr4 (178-235)||(16516168-16516225)
chr4 (94-131)||(46243111-46243148)
chr4 (92-149)||(53760788-53760845)
chr4 (91-127)||(31742888-31742924)
chr4 (91-127)||(36456050-36456086)
[»] chr7 (36 HSPs)
chr7 (112-232)||(40110737-40110859)
chr7 (112-234)||(2057433-2057556)
chr7 (112-202)||(49052823-49052914)
chr7 (112-241)||(29065810-29065940)
chr7 (112-195)||(44915233-44915317)
chr7 (112-213)||(5644696-5644798)
chr7 (116-232)||(34388265-34388382)
chr7 (92-148)||(32650591-32650647)
chr7 (124-194)||(40854007-40854078)
chr7 (112-232)||(43955517-43955635)
chr7 (112-232)||(46481946-46482066)
chr7 (112-235)||(43955555-43955676)
chr7 (92-149)||(40853987-40854044)
chr7 (112-235)||(29065857-29065981)
chr7 (112-234)||(5644715-5644838)
chr7 (146-232)||(31632722-31632809)
chr7 (149-234)||(26162112-26162198)
chr7 (92-149)||(13814978-13815035)
chr7 (112-212)||(21635923-21636024)
chr7 (112-232)||(44915195-44915316)
chr7 (93-149)||(30587887-30587943)
chr7 (118-201)||(46069422-46069506)
chr7 (175-234)||(6498767-6498826)
chr7 (175-234)||(28539170-28539229)
chr7 (91-134)||(31913235-31913278)
chr7 (136-194)||(31913256-31913315)
chr7 (94-148)||(14790134-14790187)
chr7 (94-148)||(26415973-26416027)
chr7 (175-232)||(2057395-2057452)
chr7 (175-212)||(30524275-30524312)
chr7 (175-232)||(35776957-35777014)
chr7 (112-149)||(46069429-46069466)
chr7 (92-148)||(19865539-19865595)
chr7 (112-148)||(25189211-25189247)
chr7 (175-234)||(34398950-34399010)
chr7 (175-235)||(35455801-35455861)
[»] scaffold0044 (1 HSPs)
scaffold0044 (112-228)||(56312-56429)
[»] scaffold1562 (2 HSPs)
scaffold1562 (112-232)||(405-526)
scaffold1562 (175-230)||(507-562)
[»] scaffold1158 (2 HSPs)
scaffold1158 (112-232)||(2067-2188)
scaffold1158 (175-230)||(2031-2086)
[»] scaffold0048 (1 HSPs)
scaffold0048 (151-230)||(82945-83025)
[»] scaffold0169 (1 HSPs)
scaffold0169 (149-232)||(4075-4159)
[»] scaffold0065 (1 HSPs)
scaffold0065 (91-149)||(9584-9643)
[»] scaffold0318 (1 HSPs)
scaffold0318 (149-234)||(2865-2950)
[»] scaffold0039 (1 HSPs)
scaffold0039 (92-149)||(109049-109106)
[»] scaffold0240 (1 HSPs)
scaffold0240 (92-140)||(17592-17640)
[»] scaffold0009 (2 HSPs)
scaffold0009 (154-235)||(41994-42076)
scaffold0009 (112-149)||(42035-42072)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 6919746 - 6919866
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacat 211  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  6919746 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaatggttgaattccctcaaaacattactttccctcaaaacat 6919845  T
Q  212 tctcgtatccaaacacactct 232  Q
    || |  |||||||||||||||    
T  6919846 tcccccatccaaacacactct 6919866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 9285789 - 9285645
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    |||||||||||| ||||  ||||||||||||| |||||||||||||||||  |||||||||||||||||||||| || ||| |  |||||||||||| ||    
T  9285789 aagagtgtgtttagatgagggaatgttttgagggaattcaactactttgagatgaattcaaacaatagaattcagctcaaagtagttgaattccctcaaa 9285690  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||| |||| ||||||||||| |  |||||||||||||||||    
T  9285689 acattacattccctcaaaacattcccccatccaaacacactctaa 9285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 776118 - 776239
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    |||||||||||  |||||||||||||| |  | ||||||||||||||||||||||||||| |  ||||||| |||| ||||||||| |||| ||||||||    
T  776118 aatgttttgaggaaattcaactactttaagttaaattcaaacaatagaattcaccttaaagtagttgaatttcctcaaaacattacattccctcaaaaca 776217  T
Q  211 ttctcgtatccaaacacactct 232  Q
    || || ||||||||||||||||    
T  776218 ttttcctatccaaacacactct 776239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 9763133 - 9763032
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || | ||| ||| |||||||||||||||||||||| ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  9763133 aatgttttgagggaattcaattattgtgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 9763034  T
Q  211 tt 212  Q
    ||    
T  9763033 tt 9763032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 1195350 - 1195408
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||| ||||||||||||| || ||||| |||||||| ||||||||    
T  1195350 aagagtgtgtttggatgggggaatgttttgagggatttcaaatactttgaggtgaattc 1195408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 9763050 - 9763171
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta-aatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||| |    | |||| ||||| | ||| ||||||||||||| ||||||||| || | |||||| |    
T  9763050 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcacaataattgaattccctcaaaacattacattacctcaaaata 9763149  T
Q  211 ttctcgtatccaaacacactct 232  Q
    |||    |||||||||||||||    
T  9763150 ttcctccatccaaacacactct 9763171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 1368477 - 1368512
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1368477 agagtgtgtttggatggaggaatgttttgagagaat 1368512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 29889450 - 29889509
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||||||| |||| |||||||||||    |||||||||||||||||    
T  29889450 ttgaattccctcaaaacattacattccatcaaaacattcctccatccaaacacactctaa 29889509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 34244996 - 34245055
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||||||| |||| |||||||||||    |||||||||||||||||    
T  34244996 ttgaattccctcaaaacattacattccctcaaaacattcctccatccaaacacactctaa 34245055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 15299437 - 15299471
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaa 146  Q
    ||||||||||||||||||||||||||||| |||||    
T  15299437 aatgttttgagagaattcaactactttgaggtgaa 15299471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 28918164 - 28918200
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  28918164 aagagtgtgtttggatggaggaatgttttgagggaat 28918200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 44692943 - 44692820
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||    
T  44692943 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaagtggttgaattccctcaaaacattactttccctcaaaaca 44692844  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  44692843 ttcccccatccaaacacactctaa 44692820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 44436379 - 44436258
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||||| |||| ||||||||| |||| ||||||||    
T  44436379 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaaatagttgaatttcctcaaaacattacattccctcaaaaca 44436280  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  44436279 ttcccccatccaaacacactct 44436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 9129465 - 9129344
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |  ||||||||| || ||||||||| |||| |||||| |    
T  9129465 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaacttaaagtagttgaattccatcaaaacattacattccctcaaaata 9129366  T
Q  211 ttctcgtatccaaacacactct 232  Q
     ||||  |||||||||||||||    
T  9129365 gtctcccatccaaacacactct 9129344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 9137572 - 9137451
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |  ||||||||| || ||||||||| |||| |||||| |    
T  9137572 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaacttaaagtagttgaattccatcaaaacattacattccctcaaaata 9137473  T
Q  211 ttctcgtatccaaacacactct 232  Q
     ||||  |||||||||||||||    
T  9137472 gtctcccatccaaacacactct 9137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 5415821 - 5415942
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||| | ||||||||||||||||||||||| |  ||||||||| || |||||||||||||| |||||| |    
T  5415821 aatgttttgagggaattcaactactttaaggtgagtacaaacaatagaattcaccttaaagtagttgaattccatcaaaacattactttccctcaaaata 5415920  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  5415921 ttcccccatccaaacacactct 5415942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 331993 - 332096
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc-aaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||||||| ||    
T  331993 agagtgtgtttggatggag-aatgttttgagggaattcaactactttgaggtgaattcaaaacaatagaattcaccttaaagtagttgaattccctcaaa 332091  T
Q  190 acatt 194  Q
    |||||    
T  332092 acatt 332096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 31070527 - 31070425
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||| ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  31070527 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 31070428  T
Q  211 ttc 213  Q
    |||    
T  31070427 ttc 31070425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 25655315 - 25655394
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa 171  Q
    ||||||||||| ||||| | ||||||||||| |||||||||||||||||  |||||||||| ||||||||||| ||||||    
T  25655315 agagtgtgtttggatggggaaatgttttgagggaattcaactactttgagttgaattcaaataatagaattcaacttaaa 25655394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 27252015 - 27251956
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa 171  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  27252015 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaacttaaa 27251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 28092253 - 28092335
Alignment:
Q  113 atgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacatt 194  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||  | |||||||||||| |||||||    
T  28092253 atgttttgagggaattcaattactttgaggtgaattcaaacaatagaattcacctcaaaacagttgaattccctcaaaacatt 28092335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 49457423 - 49457343
Alignment:
Q  153 caatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||||||||||| || |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||||    
T  49457423 caatagaattcaccttaaagtggttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacactct 49457343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 46429414 - 46429557
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaaa 190  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||| |    | |||| |||||  |||| |||||||||| || |||    
T  46429414 agagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaatccacctcaaaataattgaattccttcaaaa 46429513  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||| || | |||||| |||| |  |||||||||||||||||    
T  46429514 cattacattacctcaaaatattccctcatccaaacacactctaa 46429557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 46672772 - 46672878
Alignment:
Q  124 gaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatcca 222  Q
    ||||||||||||||||| ||||||||||      |||||||||| |||  | |||||||||||| ||||||||| |||| ||||||||||| |  |||||    
T  46672772 gaattcaactactttgaggtgaattcaa------gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattcccccatcca 46672865  T
Q  223 aacacactctaaa 235  Q
    |||||||||||||    
T  46672866 aacacactctaaa 46672878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 28092356 - 28092212
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||  ||||| |||||||| |    | |||||||||| ||| | ||||||||||||| ||    
T  28092356 aagagtgtgtttaaatgggggaatgttttgagggaattcaactgttttgaggtgaattctattgtttgaattcacctcaaagtaattgaattccctcaaa 28092257  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||| || || | ||||||||||| |  ||||||||| |||||||    
T  28092256 acatcacatttcctcaaaacattcccccatccaaacatactctaa 28092212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 39110432 - 39110491
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa 171  Q
    ||||||||| | |||||||||||||||||  ||||||||||||||||||||||| |||||    
T  39110432 aatgttttgtgggaattcaactactttgagttgaattcaaacaatagaattcacattaaa 39110491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 46429517 - 46429434
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||  |||||||| || ||||| ||| |||||||||||||||||||||||||| |  |||||||||||| |||||||    
T  46429517 aatgttttgaaggaattcaattattttgaggtggattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacatt 46429434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 332117 - 332059
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||||| | ||||||||    
T  332117 aagagtgtgtttggatggaagaatgttttgagggaattcaactactttaaggtgaattc 332059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 54761619 - 54761561
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||| || |||||    
T  54761619 aagagtgtgtttggatggaggaatgttttgagggaattcaaatactttgatgtaaattc 54761561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 27251916 - 27252053
Alignment:
Q  96 tgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacatt 194  Q
    ||||||| ||||| |||||||||| || ||||||||||||||| |  ||||||| |    | |||||||||| |||  | |||||||||||| |||||||    
T  27251916 tgtgtttggatgggggaatgttttaagggaattcaactactttaagttgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacatt 27252015  T
Q  195 actttccttcaaaacattctcgtatccaaacacactct 232  Q
    || |||| ||||||||| | |  |||||||||||||||    
T  27252016 acattccctcaaaacatccccccatccaaacacactct 27252053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 31070444 - 31070567
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||| |    | |||| |||||  |||| ||||||||||||| ||||||||| || | |||||| |    
T  31070444 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaata 31070543  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    |||||  || |||||| |||||||    
T  31070544 ttctccaattcaaacatactctaa 31070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 9129446 - 9129508
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaatg 237  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  ||||||||||||||| ||||    
T  9129446 ttgaattccctcaaaacattacattccctcaaaacattccctcatccaaacacactcttaatg 9129508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 9137553 - 9137615
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaatg 237  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  ||||||||||||||| ||||    
T  9137553 ttgaattccctcaaaacattacattccctcaaaacattccctcatccaaacacactcttaatg 9137615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 27485474 - 27485520
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttga 140  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  27485474 agtgtgtttggatgggggaatgttttgagggaattcaactactttga 27485520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 39215959 - 39215885
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccct 185  Q
    |||||||||||| ||||||| || ||||| ||| |||||||||||| ||||||||| ||| | ||||||||||||    
T  39215959 aatgttttgagaaaattcaattattttgaggtggattcaaacaataaaattcacctcaaagtaattgaattccct 39215885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 5415840 - 5415783
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| |||||| |||| | ||||||||||||||||    
T  5415840 ttgaattccctcaaaacattacattccctcaaaatattcccctatccaaacacactct 5415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 44692860 - 44692981
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||| ||||| | |||||||| |    | |||||||||| |||  | |||||||||||| ||||||||| |||| ||||||||    
T  44692860 aatgttttgagggaattcaaccactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 44692959  T
Q  211 ttctcgtatccaaacacactct 232  Q
    |||    |||||||||||||||    
T  44692960 ttcctccatccaaacacactct 44692981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 47284322 - 47284387
Alignment:
Q  169 aaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||| ||||||||||||| ||||||||| || | |||||| ||||||  |||||||||||||||||    
T  47284322 aaataattgaattccctcaaaacattacattacctcaaaatattctctcatccaaacacactctaa 47284387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 38506929 - 38506873
Alignment:
Q  93 gagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||| ||| ||||||||||||||| |||||||| || ||||| ||||||||    
T  38506929 gagtgtgtttggatagaggaatgttttgagggaattcaaataatttgaggtgaattc 38506873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 36398004 - 36398063
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||| ||| |||| ||||||||||| |  |||||||||||||||||    
T  36398004 ttgaattccctcaaaacaatacattccctcaaaacattcccccatccaaacacactctaa 36398063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 47284347 - 47284292
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct 167  Q
    ||||||||||| |||||||| || ||||| ||  ||||||||||||||||||||||    
T  47284347 aatgttttgagggaattcaattattttgaggttgattcaaacaatagaattcacct 47284292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 47767489 - 47767430
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||||| || ||||||||| |||| ||||||||||| |  |||||||||||||||||    
T  47767489 ttgaattccttcaaaacattacattccctcaaaacattcccccatccaaacacactctaa 47767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 2104751 - 2104809
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||| | ||||||||| ||| |||||||| |||||||| ||||||||    
T  2104751 aagagtgtgtttggataggggaatgtttcgagggaattcaaatactttgatgtgaattc 2104809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 55460357 - 55460415
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||| |||||| |||| |||||||||||||| |||||||| |||||  ||||||||||    
T  55460357 aagagcgtgtttggatgtaggaatgttttgagggaattcaaatacttgtaagtgaattc 55460415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 9007510 - 9007453
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||| ||||| ||||||||||||  |||||||| |||||| | |||||||    
T  9007510 aagagtgtgtttggatgggggaatgttttgaacgaattcaaatacttttaggtgaatt 9007453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 46672837 - 46672800
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  46672837 aatgttttgagggaattcaactactttgaggtgaattc 46672800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 671635 - 671691
Alignment:
Q  176 tgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||| ||||| ||| |||| ||||||||||| | |||||||| |||||||    
T  671635 tgaattccctcaaaacaatacattccctcaaaacattcccctatccaaaaacactct 671691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 21307520 - 21307600
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacaca 228  Q
    |||||||| |||||||||| |||  ||| |||||||||| ||||||||| ||||  |||||||||| |  |||||||||||    
T  21307520 caaacaatggaattcacctcaaagtatttgaattccctcaaaacattacattcccgcaaaacattcccccatccaaacaca 21307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 31189412 - 31189472
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||| ||| ||||||||| || | |||||||||||||  || |||||||||||||||    
T  31189412 ttgaattctctcaaaacattacattacctcaaaacattctctcattcaaacacactctaaa 31189472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 40643838 - 40643976
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacat 193  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||  | ||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  40643838 agtgtgtttggatggagaaatgttttgagggaattcaactactttgagttaaattcaaacaatagaattcaccttaaatagttgaattccctcaaaacat 40643937  T
Q  194 tactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||| |||| ||||||||||| |  |||||||||||||||    
T  40643938 tacattccctcaaaacattcccccatccaaacacactct 40643976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 9764459 - 9764338
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |  |||||||||||| |||||||||||||| |||||| |    
T  9764459 aatgttttgagggaattcaactactttgaggtgagttcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattactttccctcaaaata 9764360  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  9764359 ttcccccatccaaacacactct 9764338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 15373998 - 15374119
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta-aatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |  |||||||||||| ||||||||| |||| ||||||||    
T  15373998 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttagagtagttgaattccctcaaaacattacattccctcaaaaca 15374097  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  15374098 ttcccccatccaaacacactct 15374119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 2316500 - 2316378
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt--aaatgattgaattccctccaaacattactttccttcaaaac 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  || |  |||||||||||| ||| ||||| |||| |||||||    
T  2316500 aatgttttgagagaattcaactactttgaggtgaattcaaacaatagaattcacctttaaagtagttgaattccctcaaaatattacattccctcaaaac 2316401  T
Q  210 attctcgtatccaaacacactct 232  Q
    |||| |  |||||||||||||||    
T  2316400 attcccccatccaaacacactct 2316378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 32390093 - 32389974
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta-aatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| | |  |||||||||||| ||| ||||| |||||||||||||    
T  32390093 aatgttttgagggaattcaactactttgaggtgaattcaaataatagaattcaccttagagtagttgaattccctcaaaatattacattccttcaaaaca 32389994  T
Q  211 ttctcgtatccaaacacact 230  Q
    ||| |  |||||||||||||    
T  32389993 ttccctcatccaaacacact 32389974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 20523178 - 20523291
Alignment:
Q  119 tgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattctcgt 217  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||  ||||||||||| |      
T  20523178 tgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattctctcaaaacattccccc 20523277  T
Q  218 atccaaacacactc 231  Q
    ||||||||||||||    
T  20523278 atccaaacacactc 20523291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 32471003 - 32470902
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||  |||||||||| ||||||||| ||||| ||||  ||||||||| || ||||||||| |||| ||||||||    
T  32471003 aatgttttgagggaattcaactactttgagttgaattcaaataatagaatttaccttaaaatagttgaattccttcaaaacattacattccctcaaaaca 32470904  T
Q  211 tt 212  Q
    ||    
T  32470903 tt 32470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 3563365 - 3563278
Alignment:
Q  145 aattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactc 231  Q
    ||||||| |||||||||||||||||||  | |||||||||||| ||||||||| |||| ||||||||||| | |||||||||||||||    
T  3563365 aattcaagcaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaacattcccctatccaaacacactc 3563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 40809379 - 40809502
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||| |   ||||||| ||| ||||||||| |||  ||||||||    
T  40809379 aatgttttgagggaattcaactactttgagttgaattcaaacaataaaattcaccttaaagtagctgaattcactcaaaacattacattctctcaaaaca 40809478  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||  |  ||| |||||||||||||    
T  40809479 tttccccatctaaacacactctaa 40809502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 22767036 - 22766949
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||  |||| ||||||||||| |  ||||||||||||||||||    
T  22767036 caaacaatagaattcaccttaaagtatttgaattccctcaaaacattatattccctcaaaacattcccccatccaaacacactctaaa 22766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 34982348 - 34982216
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaa 190  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||| | ||||| ||||        |||||||||||| || |||||||||||| |||    
T  34982348 agagtgtgtttggatggaggaatgttttgagggaattcaaccactttaaggtgaa-tcaa-------gattcaccttaaagtggttgaattccctcaaaa 34982257  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    || ||| |||| ||||||||||| | ||||||||||||||||    
T  34982256 ca-tacattccctcaaaacattcccctatccaaacacactct 34982216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 15270907 - 15270849
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||    
T  15270907 aagagtgtgtttggatggaggaatgttttgagggaattcaaatactttgaggtgaattc 15270849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 22305111 - 22305169
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  22305111 aagagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattc 22305169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 2550327 - 2550384
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||    
T  2550327 aagagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaatt 2550384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 20523254 - 20523131
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | |||||||||| |||  | ||||||||||||  || ||||| |||| ||||||||    
T  20523254 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcagaatattacattccctcaaaaca 20523155  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    |||||  |||||||||||||||||    
T  20523154 ttctcccatccaaacacactctaa 20523131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 16515045 - 16515099
Alignment:
Q  115 gttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta 169  Q
    |||||||| |||||||||| |||||| |||||||| |||||||||||||||||||    
T  16515045 gttttgagggaattcaacttctttgaggtgaattctaacaatagaattcacctta 16515099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 32390014 - 32390131
Alignment:
Q  116 ttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattct 214  Q
    ||||||| ||||||||||||| | | |||||||| |  | | |||||||||| |||  | |||||||||||| ||||||||| |||| |||||| |||||    
T  32390014 ttttgagggaattcaactactctaaggtgaattctattatttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaaattct 32390113  T
Q  215 cgtatccaaacacactct 232  Q
    |  |||||||||||||||    
T  32390114 ctaatccaaacacactct 32390131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 33146191 - 33146248
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  33146191 agagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattc 33146248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 26281262 - 26281342
Alignment:
Q  156 tagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    ||||||||||||||||  | |||||||||||| ||||||||| |||| ||||||| ||| |  ||||||||||||||||||    
T  26281262 tagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaacgttcccccatccaaacacactctaaa 26281342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 34105089 - 34105137
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttga 140  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  34105089 agagtgtgtttggatggaggaatgttttgagaaaattcaaatactttga 34105137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 9764376 - 9764499
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | ||| |||||| |||  | |||||||||||| ||||||||| |||| || |||||    
T  9764376 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattccctcgaaaca 9764475  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  9764476 ttcccccatccaaacacactctaa 9764499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 15374081 - 15373958
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||| | | |||||||| |    | |||||||||| |||  | |||||||||||| ||||||||| |||| |||||| |    
T  15374081 aatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaaa 15373982  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||||   |||||||||||||||||    
T  15373981 ttcttccatccaaacacactctaa 15373958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 23092083 - 23091961
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| || |||||||||||| |  |||||||| | ||||||||||| |||||| |  ||||||||| || ||||||||| |||| |||||| |    
T  23092083 aatgttttgagggagttcaactactttcagatgaattcagaaaatagaattcaacttaaagtagttgaattccttcaaaacattacattccctcaaaata 23091984  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  ||| |||||||||||||    
T  23091983 ttc-cccatcaaaacacactctaa 23091961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 16515099 - 16515177
Alignment:
Q  155 atagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||||| |||  | |||||||||||| ||||||||| |||| | |||||||||||  |||||||||||||||    
T  16515099 atagaattcacctcaaagaagttgaattccctcaaaacattacattccctaaaaacattctctcatccaaacacactct 16515177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 28489480 - 28489538
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||| ||||||| ||||| ||||| |||||||||||||||| |||||||| ||||||||    
T  28489480 aagattgtgtttggatgggggaatattttgagagaattcaaatactttgaggtgaattc 28489538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 37722880 - 37722966
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||| |||||||||| |||  ||| |||||||||| ||||||||| |||| |||||| |||| |  |||||||||||||||||    
T  37722880 caaacaatggaattcacctcaaagtatttgaattccctcaaaacattacattccctcaaaatattcccccatccaaacacactctaa 37722966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 32250111 - 32250167
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| |||||||||||||| ||||||||||| |  |||||||||||||||    
T  32250111 ttgaattccctcaaaacattactttccctcaaaacattc-cccatccaaacacactct 32250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 2721573 - 2721628
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||    
T  2721573 ttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacact 2721628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 6634053 - 6634107
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct 167  Q
    ||||||||||| |||||||| || || || ||||||||||||||||||||||||||    
T  6634053 aatgttttgagggaattcaattatttcga-gtgaattcaaacaatagaattcacct 6634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 12064519 - 12064464
Alignment:
Q  93 gagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||| ||||| ||||||||||||| ||||| || |||||||| |||||||    
T  12064519 gagtgtgttttgatgggggaatgttttgagggaatttaaatactttgaggtgaatt 12064464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 22303883 - 22303942
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||||| || ||||||||| |||| ||||||||||| |  |||||||||||||||||    
T  22303883 ttgaattccttcaaaacattacattccctcaaaacattcccccatccaaacacactctaa 22303942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 28828468 - 28828417
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattc 163  Q
    ||||||||||| |||||||| || ||||| ||| ||||||||||||||||||    
T  28828468 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattc 28828417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 2316420 - 2316540
Alignment:
Q  116 ttttgagagaattcaactactttgaag-tgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattc 213  Q
    ||||||| ||||||||||||||| ||| ||||||| |    | |||||||||| |||  | |||||||| ||| ||||||||| |||| ||||||||||     
T  2316420 ttttgagggaattcaactactttaaaggtgaattctattgtttgaattcacctcaaagtagttgaattctctcaaaacattacattccctcaaaacattt 2316519  T
Q  214 tcgtatccaaacacactctaaa 235  Q
    ||  ||||||||||||||||||    
T  2316520 tcc-atccaaacacactctaaa 2316540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 15804379 - 15804322
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||| ||| |||| ||||||||||| |  |||||||||||||||    
T  15804379 ttgaattccctcaaaacactacattccctcaaaacattcccccatccaaacacactct 15804322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 23092064 - 23092121
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||| |||||| ||||||||| ||| |||||||||||| |  |||||||||||||||    
T  23092064 ttgaactccctcaaaacattacattcgttcaaaacattcccccatccaaacacactct 23092121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 28828422 - 28828369
Alignment:
Q  177 gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||    
T  28828422 gaattccctcaaaacattacattccctcaaaacattcccccatccaaacacact 28828369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 25935276 - 25935360
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||| |||||||||| |||  ||| ||||| ||||  |||||||| |||| ||||||||||| |  |||||||||||||||    
T  25935276 caaacaatggaattcacctcaaagtatttgaatttcctcataacattacattccctcaaaacattcccccatccaaacacactct 25935360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 40090400 - 40090484
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||| |||||||||| |||  ||| ||||||| || ||||||||| || | ||||||||||| |  |||||||||||||||    
T  40090400 caaacaatggaattcacctcaaagtatttgaattccatcaaaacattacatttcctcaaaacattcccccatccaaacacactct 40090484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 45314986 - 45314904
Alignment:
Q  7 attatcaacatggtgaaggacatcaaagacttgtggttaaccaattcggaagtgattaatcacaatcttcatgcgttcaaatc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45314986 attatcaacatggtgaaggacatcaaagacttgtggttaaccaattcggaagtgattaatcacaatcttcatgctttcaaatc 45314904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 14799978 - 14800121
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaa 189  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||||| ||||| |||| ||||||||||| |||||||||| ||  | |||||||||||| ||    
T  14799978 aagagtgtgtttggatgggggaatgttttgagggaattaaacta-tttgaggtgagttcaaacaataaaattcaccttgaagtagttgaattccctcaaa 14800076  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| |||||| |||| |  |||||||||||||||||    
T  14800077 acattactttccctcaaaatattcccccatccaaacacactctaa 14800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 17110907 - 17111030
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||| ||||||||    
T  17110907 aatgttttgagggaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaaca 17111006  T
Q  211 -ttctcgtatccaaacacactctaa 234  Q
     |||||  |||||||||||||||||    
T  17111007 tttctc-catccaaacacactctaa 17111030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 3853737 - 3853614
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||| ||| |||||||| || ||||| ||| |||||||||||||||||||||| |||  | ||||||| |||| ||||||||| |||| ||||||||    
T  3853737 aatgtttggagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaaca 3853638  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  3853637 ttcccccatccaaacacactctaa 3853614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 3858195 - 3858072
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||| ||| |||||||| || ||||| ||| |||||||||||||||||||||| |||  | ||||||| |||| ||||||||| |||| ||||||||    
T  3858195 aatgtttggagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaaca 3858096  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  3858095 ttcccccatccaaacacactctaa 3858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 33902786 - 33902664
Alignment:
Q  114 tgttttgagagaattcaa-ctactttgaagtgaattcaaa-caatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacat 211  Q
    ||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||  || |  |||||||||||| ||||||||| |||| |||||||||    
T  33902786 tgttttgagggaattcaaactactttgaggtgaattcaaaacaatagaattcacca-aagtagttgaattccctcaaaacattacattccctcaaaacat 33902688  T
Q  212 tctcgtatccaaacacactctaaa 235  Q
    ||    ||||||||||||||||||    
T  33902687 tcctccatccaaacacactctaaa 33902664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 4156236 - 4156324
Alignment:
Q  143 tgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||||||||||||||| ||||||  | |||||||||||| ||||||||| |||| |||||| ||||||  |||||||||||||    
T  4156236 tgaattcaaacaatagaattcatcttaaagtagttgaattccctcaaaacattacattccctcaaaatattctcccatccaaacacact 4156324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 13404865 - 13404976
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| |||||||||||| |||||| || ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  13404865 aatgttttgagggaattcaattattttgaggtggattcaaacaataaaattcatctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 13404964  T
Q  211 ttctcgtatcca 222  Q
    ||| | ||||||    
T  13404965 ttcccctatcca 13404976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 30444999 - 30444941
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||    
T  30444999 aagagtgtgtttggatggaggaatgttttgagggaattcaaatactttgaggtgaattc 30444941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 7202864 - 7202921
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||||||| |||||||    
T  7202864 aagagtgtgtttggatggatgaatgttttgagggaattcaactactttgaggtgaatt 7202921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 42739948 - 42739997
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttga 140  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  42739948 aagagtgtgtttggatggaggaatgttttgagggaattcaactactttga 42739997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 7202969 - 7202923
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactacttt 138  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  7202969 agagtgtgtttggatggaggaatgttttgagggaattcaactacttt 7202923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 34008799 - 34008856
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  34008799 agagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattc 34008856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 29611388 - 29611444
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||| |||||||    
T  29611388 agagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaatt 29611444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 11744717 - 11744808
Alignment:
Q  148 tcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaatgt 238  Q
    |||||||||||||||||||||||| |  ||||||||| ||  |||||||| |||| || ||| ||||||  ||||||||||||||| |||||    
T  11744717 tcaaacaatagaattcaccttaaactagttgaattccttcacaacattacattccctctaaatattctctcatccaaacacactcttaatgt 11744808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 30435284 - 30435365
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacatt 194  Q
    ||||||| ||| ||||| ||||| |||||  |||||| ||||||||||||| |||||||||  |||||||||||| |||||||    
T  30435284 aatgtttggagggaatttaacta-tttgagttgaatttaaacaatagaatttaccttaaatagttgaattccctcaaaacatt 30435365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 42711304 - 42711439
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaa 190  Q
    ||||||||||| ||||| | |||||||||||  ||||||||||||||||  ||||| |      | ||||||| || |||  | |||||||||||| |||    
T  42711304 agagtgtgtttggatggggaaatgttttgaggaaattcaactactttgagttgaatac------ttgaattcaactcaaagtagttgaattccctcaaaa 42711397  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||| |||| ||||||||||| |  |||||||||||||||    
T  42711398 cattacattccctcaaaacattccccaatccaaacacactct 42711439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 17110990 - 17110869
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | ||||||| || |||  | |||||||||||| ||||||||| |||| ||||||||    
T  17110990 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattccctcaaaacattacattccctcaaaaca 17110891  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||  |  |||||||||||||||    
T  17110890 tttccccatccaaacacactct 17110869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 31807465 - 31807409
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| ||||| ||||||||||||  |||||||||||||||    
T  31807465 ttgaattccctcaaaacattacattcct-caaaacattctctcatccaaacacactct 31807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 23011818 - 23011734
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||| |||||||||| |||  ||| ||||||||||  |||||||| |||| |||||||||||||   ||||||||||||||    
T  23011818 caaacaatggaattcacctcaaagtatttgaattccctcataacattacattccctcaaaacattctcccgtccaaacacactct 23011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 38573433 - 38573485
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattca 164  Q
    |||||||||||  |||||||||||||| |  ||||||||||||||||||||||    
T  38573433 aatgttttgaggaaattcaactacttttagttgaattcaaacaatagaattca 38573485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 24045017 - 24044958
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||||| || ||||||||| |||| ||||||||||| |  |||||||||||||||||    
T  24045017 ttgaattccttcaaaacattacattccctcaaaacattccctcatccaaacacactctaa 24044958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 26520501 - 26520447
Alignment:
Q  95 gtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||| ||||  ||||||||||||| |||||||| |||||||| ||||||||    
T  26520501 gtgtgtttggatgagggaatgttttgagggaattcaaatactttgaggtgaattc 26520447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 37268103 - 37268169
Alignment:
Q  169 aaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||| ||| ||||||||| ||||||||| || | |||||| |||| | |||||||||||||||||||    
T  37268103 aaataattaaattccctcaaaacattacattacctcaaaatattcccctatccaaacacactctaaa 37268169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 8689189 - 8689152
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacatt 212  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  8689189 ttgaattccctcaaaacattacattccttcaaaacatt 8689152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27322688 - 27322745
Alignment:
Q  188 aaacattactttccttcaaaacattctcgtatccaaacacactctaaatgtaattgaa 245  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||| ||| || |||||    
T  27322688 aaacattacattccctcaaaacattctcccatccaaacacactcttaatttatttgaa 27322745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 40046861 - 40046804
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| |||||||||||    |||||||||||||||    
T  40046861 ttgaattccctcaaaacattacattccctcaaaacattcatccatccaaacacactct 40046804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 515558 - 515618
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    ||||| |||||  ||||||||| ||||||||||||||||    ||||||||||||||||||    
T  515558 ttgaactcccttaaaacattacattccttcaaaacattcctccatccaaacacactctaaa 515618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 1088361 - 1088325
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| | ||||||||||||||||||||||    
T  1088361 aagagtgtgtttgggtggaggaatgttttgagagaat 1088325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 33986042 - 33986078
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||||||||||| |||||||| |||||||    
T  33986042 aatgttttgagagaattcaaatactttgaggtgaatt 33986078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 36103100 - 36103136
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  36103100 aagagtgtgtttggatggaggaatgttttgagggaat 36103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 44889411 - 44889351
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||||||| ||||||||  |||| |||||||||||    ||||||||||||||||||    
T  44889411 ttgaattccctcaaaacattatattccctcaaaacattcctccatccaaacacactctaaa 44889351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 45565536 - 45565392
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaa 189  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||||  |||||||||||| ||    
T  45565536 aagagtgtgtttggatggaagaatgttttgagggaattcaactactttgaggtgaatttaaacaatagaattcaccttaaaatagttgaattccctcaaa 45565437  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||| |||  ||||||||||| |  |||||||||||| ||||    
T  45565436 acattacattctctcaaaacattcccccatccaaacacaccctaa 45565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 4038113 - 4038236
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |  |||||||||||| |||||||||||||| |||||| |    
T  4038113 aatgttttgagggaattcaactactttgaggtgagttcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattactttccctcaaaata 4038212  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  4038213 ttcccccatccaaacacactctaa 4038236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 15034780 - 15034659
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||| ||||||||    
T  15034780 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaaca 15034681  T
Q  211 ttctcgtatccaaacacactct 232  Q
    |||    |||||||||||||||    
T  15034680 ttcctccatccaaacacactct 15034659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 5474416 - 5474527
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    |||||||||||| ||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |  |||||||||||| ||    
T  5474416 aagagtgtgtttggatgggggaatgttttgagggaatttaattactttgaagtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaa 5474515  T
Q  190 acattactttcc 201  Q
    ||||||| ||||    
T  5474516 acattacattcc 5474527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 28745913 - 28745799
Alignment:
Q  116 ttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacattctc 215  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||| |||||| |||| |    
T  28745913 ttttgagggaattcaactattttgaggtgaattcaaacaatagaattcaccttaaataattgaattccctcaaaccattacattccctcaaaatattccc 28745814  T
Q  216 gtatccaaacacact 230  Q
      ||||||| |||||    
T  28745813 ccatccaaatacact 28745799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 17502197 - 17502301
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    |||||||||||| ||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |  |||||||||||| ||    
T  17502197 aagagtgtgtttggatgagggaatattttgagagaattcaactactttgaggtgaattcaaataatagaattcaacttaaagtagttgaattccctcaaa 17502296  T
Q  190 acatt 194  Q
    |||||    
T  17502297 acatt 17502301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 34756548 - 34756425
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||| ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  34756548 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 34756449  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||| ||||||    
T  34756448 ttcccccatccaaacactctctaa 34756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 23536105 - 23536188
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |  |||||||||||| |||||||    
T  23536105 aatgttttgagggaattcaactactttgaggtgaattcaaacaatataattcaccttaaagtagttgaattccctcaaaacatt 23536188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 27804307 - 27804424
Alignment:
Q  116 ttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattct 214  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| |  ||||||||| || ||||||||| || | |||||||||||     
T  27804307 ttttgagggaattcaactattttgaggtgaattcaaacaatagaattcaacttaaagtagttgaattccttctaaacattacatttcctcaaaacattcc 27804406  T
Q  215 cgtatccaaacacactct 232  Q
       |||||||||||||||    
T  27804407 tccatccaaacacactct 27804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 37214857 - 37214939
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacatt 194  Q
    |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||| || |  |||||||||||| |||||||    
T  37214857 aatgttttgagagaattcaattattttgaggtggattcaaacaatagaattcacctcaagtagttgaattccctcaaaacatt 37214939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 23536204 - 23536067
Alignment:
Q  96 tgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacatt 194  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||  |    | |||||||||| |||  | |||||||||||| |||||||    
T  23536204 tgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattatattgtttgaattcacctcaaagtagttgaattccctcaaaacatt 23536105  T
Q  195 actttccttcaaaacattctcgtatccaaacacactct 232  Q
    || |||| ||||||||||| |  |||||||||||||||    
T  23536104 acattccctcaaaacattcccccatccaaacacactct 23536067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 38277536 - 38277415
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| ||| |||||||| ||||||||| |||  | ||||||||| || ||||||||| |||| |||||| |    
T  38277536 aatgttttgagggaattcaattattttgaggtggatttaaacaatataattcacctcaaagtagttgaattccttcaaaacattacattccctcaaaata 38277437  T
Q  211 ttctcgtatccaaacacactct 232  Q
    |||||  |||||||||||||||    
T  38277436 ttctctcatccaaacacactct 38277415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 32572940 - 32573080
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatg-attgaattccctccaaa 190  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| |    | |||| ||||| ||| | ||||||||||||| |||    
T  32572940 agagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaagaattgaattccctcaaaa 32573039  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacactc 231  Q
    |||||| || | |||||| |||| |  |||||| |||||||    
T  32573040 cattacattacctcaaaatattcccccatccaatcacactc 32573080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 15034697 - 15034820
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | |||||||||| |||  | |||||||||||| ||||||||| |||| ||||||||    
T  15034697 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 15034796  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  15034797 ttcccccatccaaacacactctaa 15034820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 29446828 - 29446769
Alignment:
Q  154 aatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacattc 213  Q
    |||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||||||    
T  29446828 aatagaattcaccttaaatagttgaattccctcaaaacattacattccttcaaaacattc 29446769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 50005200 - 50005079
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||| |||  | |||||||| ||| ||||||||| |||  |||||| |    
T  50005200 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagaagttgaattcgctcaaaacattacattctctcaaaata 50005101  T
Q  211 ttctcgt-atccaaacacactct 232  Q
    ||| ||| |||||||||||||||    
T  50005100 ttc-cgtcatccaaacacactct 50005079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 40264047 - 40264187
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaa 189  Q
    |||||||||||| ||| | ||||||||||||| |||||||||||||||||  ||||||| |    | |||| |||||  |||| ||||||||||||| ||    
T  40264047 aagagtgtgtttggataggggaatgttttgagggaattcaactactttgagatgaattctattgtttgaatccacctcaaaataattgaattccctcaaa 40264146  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacact 230  Q
    ||||||| || | |||||| |||| |  |||||||||||||    
T  40264147 acattacattacctcaaaatattcccccatccaaacacact 40264187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 44410429 - 44410309
Alignment:
Q  115 gttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattc 213  Q
    |||||||| |||||||| || |||  |||| ||||| |||||||||||||||| |||  | |||||||| ||  ||||||||| |||| |||||||||||    
T  44410429 gttttgagggaattcaattatttttgagtggattcagacaatagaattcacctcaaaatagttgaattcgcttaaaacattacattccctcaaaacattc 44410330  T
Q  214 tcgtatccaaacacactctaa 234  Q
    ||  ||||||| |||||||||    
T  44410329 tcccatccaaatacactctaa 44410309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 47074156 - 47074223
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaatt 162  Q
    ||||||||| ||||| ||||| ||||||  ||||||||||||||||| |||||||||||||||||||||    
T  47074156 agtgtgtttggatgg-ggaatattttgaaggaattcaactactttgaggtgaattcaaacaatagaatt 47074223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 27935606 - 27935551
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct 167  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  27935606 aatgttttgaggaaattcaactactttgagttgaattcaaacaatagaattcacct 27935551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 15245459 - 15245517
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  15245459 aagagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattc 15245517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 30190257 - 30190200
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta 169  Q
    |||||||||||  |||||||||| ||||| |||||||||||||||||||||| |||||    
T  30190257 aatgttttgaggtaattcaactattttgaggtgaattcaaacaatagaattcccctta 30190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 32573043 - 32572960
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||| |||||||| |  ||||| ||| |||||||||||||||||||||| ||| |  |||||||||||| |||||||    
T  32573043 aatgttttgagggaattcaattcttttgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacatt 32572960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 40264151 - 40264068
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||| |||||||| || ||||| ||| ||||||||||||||||||| || ||| |  |||||||||||| |||||||    
T  40264151 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattcatctcaaagtagttgaattccctcaaaacatt 40264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 24273209 - 24273295
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||| |||||||||| |||  ||| ||||||||||  |||||||| |||| ||||||||||| |  |||||||||||||||||    
T  24273209 caaacaatggaattcacctcaaagtatttgaattccctcataacattacattccctcaaaacattcccccatccaaacacactctaa 24273295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 37447415 - 37447357
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||| |||||| ||| | |||||||||||||||||||||| |||||||| ||||||||    
T  37447415 aagagcgtgtttggataggggaatgttttgagagaattcaaatactttgatgtgaattc 37447357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 4038196 - 4038075
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | ||| |||||| |||  | |||||||||||| ||||||||| |||| ||||||||    
T  4038196 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 4038097  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  | |||||||||||||    
T  4038096 ttcccccacccaaacacactct 4038075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 28632575 - 28632656
Alignment:
Q  149 caaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||| |||||||||| |||  ||||||||| ||| ||||||||| |||| || |||||||| |  |||||||||||||    
T  28632575 caaacaatggaattcacctcaaagtattgaattctctcaaaacattacattccctccaaacattccctcatccaaacacact 28632656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 32128048 - 32128105
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||  ||||||||    
T  32128048 agagtgtgtttagatgggggaatgttttgagggaattcaaatactttgtggtgaattc 32128105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 15245532 - 15245480
Alignment:
Q  143 tgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||||||||||||||||||||| |  |||||||||||| |||||||    
T  15245532 tgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacatt 15245480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 34007477 - 34007417
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaa 151  Q
    |||||||||||| ||||| | ||| ||||||| |||||||||||||||||  |||||||||    
T  34007477 aagagtgtgtttggatggggaaatattttgagggaattcaactactttgagttgaattcaa 34007417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 44571225 - 44571276
Alignment:
Q  97 gtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||| ||||| ||||||||||||| |||||||| |||||||||||||||||    
T  44571225 gtgtttggatgg-ggaatgttttgagggaattcaaatactttgaagtgaattc 44571276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 47165201 - 47165288
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaaca-ttctcgtatccaaacacactctaaa 235  Q
    |||||||| ||||||||||||||  ||| |||||||||| ||||||||| || | |||||||| |||||  ||||||||||||||||||    
T  47165201 caaacaatggaattcaccttaaagtatttgaattccctcaaaacattacatttcctcaaaacatttctc-catccaaacacactctaaa 47165288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 30190238 - 30190297
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||| |||| ||||||||| |||| ||||||||||| |  |||||||||||||||||    
T  30190238 ttgaattacctcaaaacattacattccctcaaaacattcccccatccaaacacactctaa 30190297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 6470672 - 6470762
Alignment:
Q  146 attcaaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    ||||||||||| |||| ||||| |||  ||| |||||||||| ||||||||| |||  |||||||||||    ||||||||||||||||||    
T  6470672 attcaaacaatggaatccacctcaaagaatttgaattccctcaaaacattacattctctcaaaacattccgccatccaaacacactctaaa 6470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 8224822 - 8224768
Alignment:
Q  178 aattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||||    
T  8224822 aattccctcaaaacattacattccctcaaaacattccctcatccaaacacactct 8224768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 17502321 - 17502275
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactacttt 138  Q
    ||||||||||| ||| | ||||||||||||| |||||||||||||||    
T  17502321 agagtgtgttttgattggggaatgttttgagggaattcaactacttt 17502275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 34007358 - 34007416
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattca 150  Q
    ||||||||||| ||||| | ||| ||||||| |||||||||||||||||  ||||||||    
T  34007358 agagtgtgtttggatggggaaatattttgagggaattcaactactttgagttgaattca 34007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 26501095 - 26501152
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| |||||||||||    |||||||||||||||    
T  26501095 ttgaattccctcaaaacattacattccctcaaaacattcctccatccaaacacactct 26501152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 27935504 - 27935560
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| | |||||||||||| |||||||||||||| | ||||||||    
T  27935504 agagtgtgtttggatgg-gaaatgttttgagaaaattcaactactttcaggtgaattc 27935560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 34756465 - 34756502
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  34756465 aatgttttgagggaattcaactactttgaggtgaattc 34756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 37214959 - 37214914
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactt 137  Q
    ||||||||||| |||||  |||||||||||| ||||||||||||||    
T  37214959 agagtgtgtttggatgggagaatgttttgagggaattcaactactt 37214914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 50471767 - 50471824
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||| ||||| |||| |||||||| |||||||| |||||| | |||||||    
T  50471767 aagagtgtgtttggatgggggaaagttttgagggaattcaaatactttcaggtgaatt 50471824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 15034658 - 15034694
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  15034658 aagagtgtgtttggatggaggaatgttttgagggaat 15034694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 26501153 - 26501117
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  26501153 aagagtgtgtttggatggaggaatgttttgagggaat 26501117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 11684732 - 11684603
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaa 190  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||        |||||||||||| |||    
T  11684732 aagagtgtgtttggatggaggaatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcacc--------ttgaattccctcaaaa 11684641  T
Q  191 cattactttccttcaaaacattctcgtatccaaacaca 228  Q
    |||||| |||| ||||||||||| |  |||||||||||    
T  11684640 cattacattccctcaaaacattcccccatccaaacaca 11684603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 10244319 - 10244175
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaa 189  Q
    |||||||| |||  |||| |||||||||| || ||||||||||||||||| |||| ||||||||||| |||||||||| || |  |||||||||||| ||    
T  10244319 aagagtgtatttgaatgggggaatgttttaagggaattcaactactttgaggtgagttcaaacaataaaattcaccttgaagtagttgaattccctcaaa 10244220  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||| || ||||||  |||||||||||||||||    
T  10244219 acattactttccctcagaatattctcccatccaaacacactctaa 10244175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 784831 - 784955
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||  ||||| |||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||| |||||| |    
T  784831 aatgttttgaaggaatttaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccatcaaaata 784930  T
Q  211 ttctcgtatccaaacacactctaaa 235  Q
    ||| |  ||||||||||||||||||    
T  784931 ttcccccatccaaacacactctaaa 784955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 11824704 - 11824801
Alignment:
Q  98 tgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||| ||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||| |  |||||||||||| |||||||    
T  11824704 tgtttggatggaggaatgttttgagggaattcaactactttgagatgaattcaaacaatataattcaccttaaagtagttgaattccctcaaaacatt 11824801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 14365738 - 14365860
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc-aaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||  || |  |||||||||||| ||||||||| |||| ||||||||    
T  14365738 aatgttttgagggaattcaactactttgaggtgaattcaaaacaatagaattcacc-aaagtagttgaattccctcaaaacattacattccctcaaaaca 14365836  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    |||    |||||||||||||||||    
T  14365837 ttcctccatccaaacacactctaa 14365860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 41461553 - 41461676
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||| || || ||||| ||| |||||||||||||||||||||| |||  | |||||||||||| ||||||||| |||| ||||||||    
T  41461553 aatgttttgagggaatttaattattttgaggtggattcaaacaatagaattcacctcaaaatagttgaattccctcaaaacattacattccctcaaaaca 41461652  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  41461653 ttcccccatccaaacacactctaa 41461676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 11716446 - 11716539
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacat 211  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||        |||||||||||| ||||||||| |||| |||||||||    
T  11716446 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcacc--------ttgaattccctcaaaacattacattccctcaaaacat 11716537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 14537237 - 14537320
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||| |||||||    
T  14537237 aatgttttgaggtaattcaactactttgaggtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacatt 14537320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 14537340 - 14537199
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaa 190  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||| |    | |||||||||| ||| |  ||||||| |||| |||    
T  14537340 agagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattacctcaaaa 14537241  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||| |||| ||||||||||| |  |||||||||||||||    
T  14537240 cattacattccctcaaaacattcccccatccaaacacactct 14537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 3345887 - 3345783
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaac-tactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    |||| |||||| ||||| | ||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||| |  |||||||||||| ||    
T  3345887 agagcgtgtttggatggggaaatgttttgagggaattcaacgtactttgaggtgaattcaaacaatagaatttaccttaaagtagttgaattccctcaaa 3345788  T
Q  190 acatt 194  Q
    |||||    
T  3345787 acatt 3345783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 27033613 - 27033490
Alignment:
Q  110 ggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaa 208  Q
    ||||| ||||||| |||||||| |  ||||| ||| |||||||||||||||||||||| |||  | |||||||||||| ||||||||| |||  ||||||    
T  27033613 ggaatattttgagggaattcaattcttttgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattctctcaaaa 27033514  T
Q  209 cattctcgtatccaaacacactct 232  Q
    ||||| |  |||||||||||||||    
T  27033513 cattcccccatccaaacacactct 27033490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 14954308 - 14954390
Alignment:
Q  116 ttttgagagaattcaactactttgaagtgaattc-aaacaatagaattcaccttaaa-tgattgaattccctccaaacattac 196  Q
    |||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||| |  |||||||||||| |||||||||    
T  14954308 ttttaagagaattcaactactttaaagtaaattcaaaacaatagaattcaccttaaagtagttgaattccctcaaaacattac 14954390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 11716465 - 11716406
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||||||| |||| ||||||||||||   |||||||||||||||||    
T  11716465 ttgaattccctcaaaacattacattccctcaaaacattcttccatccaaacacactctaa 11716406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 41585746 - 41585691
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaa 146  Q
    |||||||||||| ||||| | ||||||||||| |||||||| ||||||||||||||    
T  41585746 aagagtgtgtttggatggtgaaatgttttgagggaattcaaatactttgaagtgaa 41585691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 11824819 - 11824765
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||    
T  11824819 agtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaatt 11824765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 8736496 - 8736439
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||  ||||||||||||| |||||||| |||||||| ||||||||    
T  8736496 agagtgtgtttggatgagggaatgttttgagggaattcaaatactttgaggtgaattc 8736439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 14365757 - 14365700
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||||    
T  14365757 ttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacactct 14365700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17180354 - 17180297
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||||    
T  17180354 ttgaattccctcaaaacattacattccctcaaaacattccctcatccaaacacactct 17180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 20935725 - 20935781
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  20935725 agagtgtgtttggatgg-ggaatgttttgagggaattcaaatactttgatgtgaattc 20935781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 3345765 - 3345809
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactacttt 138  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||    
T  3345765 agtgtgtttggatgggggaatgttttgagggaattcaactacttt 3345809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 10480203 - 10480119
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||| |||||||||| |||  ||| ||||||||||  |||||||| |||| ||||||||||| |  |||||||||||||||    
T  10480203 caaacaatggaattcacctcaaagtatttgaattccctcgtaacattacattccctcaaaacattcccccatccaaacacactct 10480119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 30751338 - 30751418
Alignment:
Q  151 aacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactc 231  Q
    |||||||||||||| |||||||  || ||||| ||| ||||||||| ||   |||||||||||||  ||||||||||||||    
T  30751338 aacaatagaattcatcttaaatatttaaattcactcaaaacattacattatctcaaaacattctctcatccaaacacactc 30751418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 11607241 - 11607296
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||| ||||| | ||||||||||| |||||||| |||||||| ||||||||    
T  11607241 agtgtgtttggatggggtaatgttttgagggaattcaaatactttgaggtgaattc 11607296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 39630308 - 39630245
Alignment:
Q  149 caaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacatt 212  Q
    ||||||||||||||| ||| ||||  |||||||||||| ||||| ||| |||| ||||||||||    
T  39630308 caaacaatagaattcccctcaaatatttgaattccctcaaaacaatacattccctcaaaacatt 39630245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 27033528 - 27033565
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  27033528 aatgttttgagggaattcaactactttgaggtgaattc 27033565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 27033489 - 27033525
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  27033489 aagagtgtgtttggatgggggaatgttttgagagaat 27033525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 7352933 - 7352814
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||| || ||||||||| |||| ||||||||    
T  7352933 aatgttttgagggaattcaactactttgaattgaattcaaacaatagaattcaccttaaaatagttgaattccatcaaaacattacattccctcaaaaca 7352834  T
Q  211 ttctcgtatccaaacacact 230  Q
    ||| |  |||||||||||||    
T  7352833 ttcccccatccaaacacact 7352814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 14982421 - 14982278
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaa 189  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||| |  || ||||||||| ||    
T  14982421 aagagtgtgtttggatgggggaatcttttgagggaattcaactactttgaggtgaattcaaa-aataaaattcaccttaaagtagttaaattccctcaaa 14982323  T
Q  190 acattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    ||||||| |||| |||||||||||    |||||||||||||||||    
T  14982322 acattacattccctcaaaacattcctccatccaaacacactctaa 14982278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 28845992 - 28845890
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||| ||||||||    
T  28845992 aatgttttgagggaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcgaaacattacattccctcaaaaca 28845893  T
Q  211 ttc 213  Q
    |||    
T  28845892 ttc 28845890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 4441468 - 4441338
Alignment:
Q  93 gagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatgattgaattccctccaaaca 192  Q
    |||||||||| ||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||         |||||||||||| |||||    
T  4441468 gagtgtgtttggatgggggaatgttttgaggaaattcaactactttgaggtgaattcaaacaatagaattcac--------gttgaattccctcaaaaca 4441377  T
Q  193 ttactttccttcaaaacattctcgtatccaaacacactc 231  Q
    |||| |||| |||||||||||    ||||||||||||||    
T  4441376 ttacattccctcaaaacattccaccatccaaacacactc 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 857360 - 857270
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttcc 201  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| ||||    
T  857360 aatgttttgagggaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattcc 857270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 36456007 - 36455905
Alignment:
Q  133 tactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactc 231  Q
    |||||||| |||||||||||||||||||||||||||||| |  |||||||||||| ||||||||  |||| ||||||||||| |  ||||||||||||||    
T  36456007 tactttgaggtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattagattccctcaaaacattcccccatccaaacacactc 36455908  T
Q  232 taa 234  Q
    |||    
T  36455907 taa 36455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 1107090 - 1107214
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta-aatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||| | |  |||||||||||| ||||||||  |||| |||||| |    
T  1107090 aatgttttgaaggaattcaactactttgagatgaattcaaacaatagaattcaccttagagtagttgaattccctcaaaacattatattccctcaaaata 1107189  T
Q  211 ttctcgtatccaaacacactctaaa 235  Q
    ||| |  ||||||| ||||||||||    
T  1107190 ttcccccatccaaatacactctaaa 1107214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 11041005 - 11041088
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |  |||||||||||| |||||||    
T  11041005 aatgttttgagagaattcaactactttgaggtgaatccaaacaatagaattcaccataaagtagttgaattccctcaaaacatt 11041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 15660221 - 15660344
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || |||||  || ||||||||||||||||||| || |||  | |||||||||||| ||||||||| |||| ||||||||    
T  15660221 aatgttttgagggaattcaattattttgagatggattcaaacaatagaattcagctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 15660320  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  15660321 ttccctcatccaaacacactctaa 15660344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 41498611 - 41498486
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctc-caaacattactttccttcaaaac 209  Q
    ||||||||||  |||||||| || ||||| ||||||| |||||||||||||||||||||| || ||||||||||||  |||||||| ||||  |||||||    
T  41498611 aatgttttgaaggaattcaattattttgaggtgaatttaaacaatagaattcaccttaaagtggttgaattccctcaaaaacattattttctctcaaaac 41498512  T
Q  210 attctcgtatccaaacacactctaaa 235  Q
    | || |  ||||||||||||||||||    
T  41498511 aatcccccatccaaacacactctaaa 41498486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 26251050 - 26250911
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaaa 190  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| |  | | |||| |||||  |||| |||||||| |||| |||    
T  26251050 agagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattctattatttgaatccacctcaaaataattgaatttcctcaaaa 26250951  T
Q  191 cattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||| || | |||||| |||| |  |||||||||||||    
T  26250950 cattacattacctcaaaatattccctcatccaaacacact 26250911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 10128012 - 10128135
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||  |||||||| || ||||| ||| ||||||||||||||||||| || ||| |  |||||||||||| ||||||||| |||  ||||||||    
T  10128012 aatgttttgaaggaattcaattattttgaggtggattcaaacaatagaattcatctcaaagtagttgaattccctcaaaacattacattctctcaaaaca 10128111  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  ||||||| |||||||||    
T  10128112 ttcccccatccaaatacactctaa 10128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 49111433 - 49111374
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa 171  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  49111433 aatgttttgagggaattcaactattttgaggtgaattcaaacaatagaattccccttaaa 49111374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 42844664 - 42844562
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||| |||| || ||||||||| |||||||||||||||||||||| ||| |  ||||||||| || ||| ||||| |||| ||||||||    
T  42844664 aatgttttgagggaaatcaattattttgaagtggattcaaacaatagaattcacctcaaagtagttgaattccttcaaaatattacattccctcaaaaca 42844565  T
Q  211 ttc 213  Q
    |||    
T  42844564 ttc 42844562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 49111414 - 49111474
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  ||||||||||||||||||    
T  49111414 ttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacactctaaa 49111474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 857277 - 857400
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | |||||||| |    | ||||||| || |||  | |||||||||||| ||||||||| |||| ||||||||    
T  857277 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattccctcaaaacattacattccctcaaaaca 857376  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||  |  |||||||||||||||||    
T  857377 tttccccatccaaacacactctaa 857400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 31473933 - 31473846
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    ||||||||| ||||||||| |||  ||| ||||||||||  |||||||| |||| ||||||||||| |  ||||||||||||||||||    
T  31473933 caaacaataaaattcacctcaaagtatttgaattccctcataacattacattccctcaaaacattcccccatccaaacacactctaaa 31473846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 42775625 - 42775680
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||    
T  42775625 agtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattc 42775680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 467923 - 467879
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaata 157  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  467923 aatgttttgag-gaattcaaccactttgaagtgaattcaaacaata 467879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 12914054 - 12914119
Alignment:
Q  130 aactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacatt 194  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||||  |||||||||||| |||||||    
T  12914054 aactactttgaggtgaattcaaacaataaaattcatcttaaaatagttgaattccctcaaaacatt 12914119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 15660304 - 15660183
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||||||||||||  ||||||| |    | |||| || || ||| | ||||||||||||| ||||||||| || | |||||| |    
T  15660304 aatgttttgagggaattcaactactttgagctgaattctattgtttgaatccatctcaaaataattgaattccctcaaaacattacattacctcaaaata 15660205  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| | ||||||||||||||||    
T  15660204 ttcccctatccaaacacactct 15660183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 27284705 - 27284661
Alignment:
Q  104 gatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||    
T  27284705 gatggaggaatgttttaagagaattcaaatactttgaggtgaatt 27284661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 46724263 - 46724195
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattcaaacaatagaatt 162  Q
    ||||||||| ||||| | ||| ||||||| |||||||| || ||||| ||| |||||||||||||||||    
T  46724263 agtgtgtttggatggggaaatattttgagggaattcaattattttgaggtggattcaaacaatagaatt 46724195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 56339151 - 56339207
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||||| ||||  ||||||||||||| |||||||| |||||||| |||||||    
T  56339151 agagtgtgtttggatgatggaatgttttgagggaattcaaatactttgatgtgaatt 56339207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 26250947 - 26251030
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    |||||||||||  ||||||| || ||||| ||| ||||||| |||||||||||||| ||| |  |||||||||||| |||||||    
T  26250947 aatgttttgaggaaattcaattattttgaggtggattcaaataatagaattcacctcaaagtagttgaattccctcaaaacatt 26251030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 32724930 - 32725003
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgaga---gaattcaactactttgaagtgaattcaaacaatagaatt 162  Q
    |||||||||||  |||| |||||||||||||    |||||||| |||||||| |||| ||||||||||||||||    
T  32724930 agagtgtgtttgaatgggggaatgttttgaggagggaattcaattactttgaggtgagttcaaacaatagaatt 32725003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 54566189 - 54566244
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaa 146  Q
    |||||||||||| |||| | |||||||||||| |||||||| |||||||| |||||    
T  54566189 aagagtgtgtttggatgaaagaatgttttgagggaattcaattactttgatgtgaa 54566244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 21012632 - 21012574
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| |||||| |||||||||||| ||||| || || ||||| ||||||||    
T  21012632 aagagtgtgtttggatggacgaatgttttgagggaatttaaatattttgaggtgaattc 21012574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 1112662 - 1112605
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| || | ||||||||||| |  |||||||||||||||    
T  1112662 ttgaattccctcgaaacattacatttcctcaaaacattcccccatccaaacacactct 1112605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 4896711 - 4896646
Alignment:
Q  169 aaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||| ||||||||||||| ||||||||| || | |||||| |||| |  |||||||||||||||||    
T  4896711 aaataattgaattccctcaaaacattacattacctcaaaatattcccccatccaaacacactctaa 4896646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 4896753 - 4896716
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  4896753 aatgttttgagggaattcaactactttgaggtgaattc 4896716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 7352914 - 7352971
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||| ||||||||||  |  |||||||||||||||    
T  7352914 ttgaattccctcaaaacattacattccctcaaaacatttccccatccaaacacactct 7352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 16516225 - 16516168
Alignment:
Q  178 aattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||| || ||||||||| |||| ||||||||||| |  ||||||||||||||||||    
T  16516225 aattccttcaaaacattacattccgtcaaaacattcccccatccaaacacactctaaa 16516168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 46243148 - 46243111
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaa 131  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  46243148 agtgtgtttggatgggggaatgttttgagagaattcaa 46243111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 53760845 - 53760788
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||  |||| ||||||||||||| |||||||| || ||||| ||||||||    
T  53760845 agagtgtgtttgaatgggggaatgttttgagggaattcaaatattttgatgtgaattc 53760788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 31742924 - 31742888
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  31742924 aagagtgtgtttggatggaggaatgttttgagggaat 31742888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 36456086 - 36456050
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaat 127  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  36456086 aagagtgtgtttggatggaggaatgttttgagggaat 36456050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 40110859 - 40110737
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaa-caatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaac 209  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||  | |||||||||||| ||||||||| |||| |||||||    
T  40110859 aatgttttgagggaattcaactactttgaggtgaattcaaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 40110760  T
Q  210 attctcgtatccaaacacactct 232  Q
    |||| |  |||||||||||||||    
T  40110759 attcccccatccaaacacactct 40110737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 2057433 - 2057556
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||| || |  |||||||||||| |||||||||||||| |||||| |    
T  2057433 aatgttttgagggaattcaactactttgaggtgagttcaaacaataaaattcaccttgaagtagttgaattccctcaaaacattactttccctcaaaata 2057532  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  2057533 ttcccccatccaaacacactctaa 2057556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 49052823 - 49052914
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttcct 202  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||||    
T  49052823 aatgttttgagtgaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattcct 49052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 29065940 - 29065810
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||| ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  29065940 aatgttttgagggaattcaattattttgaggtggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 29065841  T
Q  211 ttctcgtatccaaacacactctaaatgtaat 241  Q
    |||    ||||||||||||||| || |||||    
T  29065840 ttcatccatccaaacacactcttaaggtaat 29065810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 44915233 - 44915317
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctta-aatgattgaattccctccaaacatta 195  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| | |  |||||||||||| ||||||||    
T  44915233 aatgttttgaaggaattcaactactttgaggtgaattcaaacaatagaattcaccttagagtagttgaattccctcaaaacatta 44915317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 5644798 - 5644696
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| |||||||| || ||||| |||  ||||||||||||||||||||| ||| |  |||||||||||| ||||||||| |||| ||||||||    
T  5644798 aatgttttgagggaattcaattattttgaggtgggttcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca 5644699  T
Q  211 ttc 213  Q
    |||    
T  5644698 ttc 5644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 34388382 - 34388265
Alignment:
Q  116 ttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaacattct 214  Q
    ||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||| |  |||||||| |||  ||||||||||| | |||||| |||      
T  34388382 ttttgagggaattcaactactttgaggtgagttcaaacaatggaattcaccttaaagtagttgaattctctcagaacattacttttcctcaaaatatttc 34388283  T
Q  215 cgtatccaaacacactct 232  Q
    |  |||||||||||||||    
T  34388282 cccatccaaacacactct 34388265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 32650591 - 32650647
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  32650591 agagtgtgtttcgatggaggaatgttttgagggaattcaaatactttgaggtgaatt 32650647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 40854078 - 40854007
Alignment:
Q  124 gaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacatt 194  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||||||||||| |||||||    
T  40854078 gaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacatt 40854007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 43955635 - 43955517
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| | ||| |||| ||   ||||||||| ||||||  | |||||||||||| ||||||||| |||| ||||||||    
T  43955635 aatgttttgagggaattcaactactttaaggtgcattctaa---tagaattcatcttaaagtagttgaattccctcaaaacattacattccctcaaaaca 43955539  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  43955538 ttcccccatccaaacacactct 43955517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 46482066 - 46481946
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacctt-aaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    |||||||||||| |||||||||| |||||  |||||||||||||||||||||| ||| ||||  || |||| |||| ||||||||| ||| ||| ||| |    
T  46482066 aatgttttgagaaaattcaacta-tttgagttgaattcaaacaatagaattcatcttcaaatagttaaatttcctcaaaacattacattctttcgaaata 46481968  T
Q  211 ttctcgtatccaaacacactct 232  Q
    || ||  |||||||||||||||    
T  46481967 ttttcccatccaaacacactct 46481946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 43955555 - 43955676
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||| |  ||||||| |    |||||| |||||||||  | |||||||||||| ||||||||| |||| ||||||||    
T  43955555 aatgttttgagggaattcaactactttaagatgaattctat---tagaatgcaccttaaagtagttgaattccctcaaaacattacattccctcaaaaca 43955651  T
Q  211 ttctcgtatccaaacacactctaaa 235  Q
    ||| |  ||||||||||||| ||||    
T  43955652 ttcccccatccaaacacactataaa 43955676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 40853987 - 40854044
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  40853987 agagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattc 40854044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 29065857 - 29065981
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||| |    | |||| |||||  |||| ||||||||||||| ||||||||| || | | ||||||    
T  29065857 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacattaccttaaaaca 29065956  T
Q  211 ttctcgtatccaaacacactctaaa 235  Q
    |||    ||||||||||||||||||    
T  29065957 ttcctccatccaaacacactctaaa 29065981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 5644715 - 5644838
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcacct-taaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||||||| |    | |||  |||||  |||| ||||||||||||| ||||||||| || | |||||||     
T  5644715 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaacccacctcaaaataattgaattccctcaaaacattacattacctcaaaacg 5644814  T
Q  211 ttctcgtatccaaacacactctaa 234  Q
    ||| |  |||||||||||||||||    
T  5644815 ttcccccatccaaacacactctaa 5644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 31632809 - 31632722
Alignment:
Q  146 attcaaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||| |||||||||| |||  ||| ||||||||||  |||||||| |||| ||||||||||| |  |||||||||||||||    
T  31632809 attcaaacaatggaattcacctcaaagtatttgaattccctcataacattacattccctcaaaacattcccccatccaaacacactct 31632722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 26162112 - 26162198
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||| |||||||||| |||  ||| ||||||||||  |||||||| |||| ||||||||||| |  |||||||||||||||||    
T  26162112 caaacaatggaattcacctcaaagtatttgaattccctcataacattacattccctcaaaacattcccccatccaaacacactctaa 26162198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 13815035 - 13814978
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||| | ||||||||||||| |||||||| |||||||| ||||||||    
T  13815035 agagtgtgtttggataggggaatgttttgagggaattcaaatactttgatgtgaattc 13814978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 21635923 - 21636024
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| | |||||| || ||||| ||| ||||||||||||||||||| || ||| |  || |||||| || ||||||||| |||| ||||||||    
T  21635923 aatgttttgaggggattcaattattttgaggtggattcaaacaatagaattcatctcaaagtagttaaattccttcaaaacattacattccctcaaaaca 21636022  T
Q  211 tt 212  Q
    ||    
T  21636023 tt 21636024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 44915316 - 44915195
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||| | | |||||||| |    | |||||||||| |||  | ||||||||| || ||||||||| |||| |||||| |    
T  44915316 aatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcacctcaaagtagttgaattccttcaaaacattacgttccctcaaaaaa 44915217  T
Q  211 ttctcgtatccaaacacactct 232  Q
    |||||  |||||||||||||||    
T  44915216 ttctctcatccaaacacactct 44915195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 30587943 - 30587887
Alignment:
Q  93 gagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||| ||||| ||||||||||||| |||||||| |||||| | ||||||||    
T  30587943 gagtgtgtttggatgggggaatgttttgagggaattcaaatactttaatgtgaattc 30587887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 46069506 - 46069422
Alignment:
Q  118 ttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttcc 201  Q
    ||||| |||||||| || |||||  || |||||||||||||||||||||| ||| |  |||||||||||| ||||||||| ||||    
T  46069506 ttgagggaattcaattattttgagatggattcaaacaatagaattcacctcaaagtagttgaattccctcaaaacattacattcc 46069422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 6498767 - 6498826
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||||||| |||| |||||||||||    |||||||||||||||||    
T  6498767 ttgaattccctcaaaacattacattccctcaaaacattcctccatccaaacacactctaa 6498826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 28539170 - 28539229
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||||||| ||||| ||| |||| ||||||||||| |  |||||||||||||||||    
T  28539170 ttgaattccctcaaaacaatacattccctcaaaacattcccccatccaaacacactctaa 28539229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 31913235 - 31913278
Alignment:
Q  91 aagagtgtgtttcgatggaggaatgttttgagagaattcaacta 134  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||    
T  31913235 aagagtgtgtttggatgggggaatgttttgagggaattcaacta 31913278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 31913315 - 31913256
Alignment:
Q  136 tttgaagtgaattcaaacaatagaatt-caccttaaatgattgaattccctccaaacatt 194  Q
    ||||| || |||||||||||||||||| ||||||||||  |||||||||||| |||||||    
T  31913315 tttgaggtaaattcaaacaatagaatttcaccttaaatagttgaattccctcaaaacatt 31913256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 14790134 - 14790187
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||| ||||| ||||||||||||| |||||||| |||||||| |||||||    
T  14790134 agtgtgtttggatgg-ggaatgttttgagggaattcaaatactttgaggtgaatt 14790187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 26415973 - 26416027
Alignment:
Q  94 agtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||| ||| |||||||||||| | ||||||||| |||||||| |||||||    
T  26415973 agtgtgtttggattgaggaatgttttaaaagaattcaaatactttgaggtgaatt 26416027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 2057452 - 2057395
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    |||||||||||| ||||||||| |||  ||||||||||| |  |||||||||||||||    
T  2057452 ttgaattccctcaaaacattacattcgctcaaaacattcccccatccaaacacactct 2057395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 30524312 - 30524275
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacatt 212  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  30524312 ttgaattccctcaaaacattacattccttcaaaacatt 30524275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 35776957 - 35777014
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||||  |||||||| |||| ||||||||||| |  |||||||||||||||    
T  35776957 ttgaattccctcataacattacattccctcaaaacattccctcatccaaacacactct 35777014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 46069429 - 46069466
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  46069429 aatgttttgagggaattcaactactttgaggtgaattc 46069466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 19865595 - 19865539
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||||| ||||  |||||||||||||  ||||||| |||||||| |||||||    
T  19865595 agagtgtgtttggatgagggaatgttttgaggaaattcaaatactttgaggtgaatt 19865539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 25189247 - 25189211
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaatt 148  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  25189247 aatgttttgagggaattcaaatactttgaagtgaatt 25189211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 34398950 - 34399010
Alignment:
Q  175 ttgaattc-cctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||| |||| ||||||||| |||| ||||||||||| |  |||||||||||||||||    
T  34398950 ttgaattcacctcaaaacattacattccctcaaaacattcccccatccaaacacactctaa 34399010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 35455861 - 35455801
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||||||  ||||| ||| |||| ||||||||||| |  ||||||||||||||||||    
T  35455861 ttgaattcccttaaaacaatacattccctcaaaacattcccccatccaaacacactctaaa 35455801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 56312 - 56429
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattcaccttaaa-tgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |  |||||||||||| |||||||||||||| |||||| |    
T  56312 aatgttttgagggaattcaactactttgaggtgagttcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattactttccctcaaaata 56411  T
Q  211 ttctcgtatccaaacaca 228  Q
    ||| |  |||||||||||    
T  56412 ttccctcatccaaacaca 56429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 526 - 405
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattca-ccttaaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||| || |  |||||||||||| |||||||| ||||| |||||| |    
T  526 aatgttttgagggaattcaactactttgaggtgagttcaaacaatagaattcaccctgaagtagttgaattccctcaaaacattattttccctcaaaata 427  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  426 ttcccccatccaaacacactct 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 507 - 562
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||    
T  507 ttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacact 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 2067 - 2188
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattcaaacaatagaattca-ccttaaatgattgaattccctccaaacattactttccttcaaaaca 210  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||| || |  |||||||||||| |||||||| ||||| |||||| |    
T  2067 aatgttttgagggaattcaactactttgaggtgagttcaaacaatagaattcaccctgaagtagttgaattccctcaaaacattattttccctcaaaata 2166  T
Q  211 ttctcgtatccaaacacactct 232  Q
    ||| |  |||||||||||||||    
T  2167 ttcccccatccaaacacactct 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 2086 - 2031
Alignment:
Q  175 ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||    
T  2086 ttgaattccctcaaaacattacattccctcaaaacattcccccatccaaacacact 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 83025 - 82945
Alignment:
Q  151 aacaatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacact 230  Q
    |||||||||||||||||||||  | |||||||||||| ||||||||| |||| ||||||||||| |  |||||||||||||    
T  83025 aacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaacattcacccatccaaacacact 82945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 4159 - 4075
Alignment:
Q  149 caaacaatagaattcaccttaaatgatt-gaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactct 232  Q
    ||||||||||||||||||| |||  ||| |||||||||| ||||||||| |||  |||||||||||   ||||||||||||||||    
T  4159 caaacaatagaattcacctcaaagtatttgaattccctcaaaacattacattctctcaaaacattcctttatccaaacacactct 4075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 9643 - 9584
Alignment:
Q  91 aagagtgtgtttcgatggaggaatg-ttttgagagaattcaactactttgaagtgaattc 149  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| || |||||    
T  9643 aagagtgtgtttagatggaggaatgtttttgagagaattcaaatactttgaggtaaattc 9584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 2950 - 2865
Alignment:
Q  149 caaacaatagaattcaccttaaatgattgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaa 234  Q
    |||||||| |||||||||| ||||  |||||||||||| ||||||||| |||  || |||||||| |  ||| |||||||||||||    
T  2950 caaacaatggaattcacctcaaatatttgaattccctcaaaacattacattctctcgaaacattcccccatctaaacacactctaa 2865  T

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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 109049 - 109106
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||| ||||||||||||| ||||| || |||||||| ||||||||    
T  109049 agagtgtgtttggatgggggaatgttttgagggaatttaaatactttgatgtgaattc 109106  T

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Target: scaffold0240 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 17640 - 17592
Alignment:
Q  92 agagtgtgtttcgatggaggaatgttttgagagaattcaactactttga 140  Q
    ||||||||||| ||||| ||||||||||||| |||||||||| ||||||    
T  17640 agagtgtgtttggatgggggaatgttttgagggaattcaactcctttga 17592  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 42076 - 41994
Alignment:
Q  154 aatagaattcaccttaaatga-ttgaattccctccaaacattactttccttcaaaacattctcgtatccaaacacactctaaa 235  Q
    |||||||||||||| |||  | |||||||||||| ||||||||| |||| |||||||||||    || |||||||||||||||    
T  42076 aatagaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattcctccattcaaacacactctaaa 41994  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 42035 - 42072
Alignment:
Q  112 aatgttttgagagaattcaactactttgaagtgaattc 149  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  42035 aatgttttgagggaattcaactactttgaggtgaattc 42072  T

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