View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5804-10 (Length: 138)
Name: Solexa-NF5804-10
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5804-10 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 6753717 - 6753848
Alignment:
| Q |
4 |
catagggctgaaataatacaatataaatgagagaagtatatattatcctagatattgtaaagtatcaatgagagaagtatatgttacaatatcaaagaga |
103 |
Q |
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| T |
6753717 |
catagggctgaaataatacaatataaacgagagaagtatatattatcctagagattgtaaagtatcaatgagagaagtatatgttacaatatcaaagaga |
6753816 |
T |
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| Q |
104 |
gaagtacaagtaaaataga-tgcattaatgat |
134 |
Q |
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| T |
6753817 |
gaactacaagtaaaatagattgcattaatgat |
6753848 |
T |
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Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 9768761 - 9768839
Alignment:
| Q |
40 |
tatatattatcctagatattgtaaagtatcaatgagagaagtatatgttacaatatcaaagagagaagtacaagtaaaa |
118 |
Q |
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| T |
9768761 |
tatatattatcctagatatcgtagagtaacaataagagaaatatatgttacaatatcaaagagagaagtacgagtaaaa |
9768839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 21089 - 21129
Alignment:
| Q |
70 |
aatgagagaagtatatgttacaatatcaaagagagaagtac |
110 |
Q |
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| T |
21089 |
aatgagagaagtatatggtacaatatcaaagagagaagtac |
21129 |
T |
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