View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5804-11 (Length: 132)
Name: Solexa-NF5804-11
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5804-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32409710 - 32409579
Alignment:
| Q |
1 |
gaaagtagaagcatcgcttgatgttgaaatggatctgtcacctgatgtgaaagtgcagtcatcacctatcatacaaatggagccatcaccaaagtccaat |
100 |
Q |
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| T |
32409710 |
gaaagtagaagcatcgcttgatgttgaaatggatctgtcacatgatgtgaaagtgtagtcatcacctatcatacaaatggagccatcaccaaagtccaat |
32409611 |
T |
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| Q |
101 |
aaaaggatgtgtacaatccttgcaaaaagaat |
132 |
Q |
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| T |
32409610 |
aaaaggatgtgtacaatccttgcaaaaagaat |
32409579 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 3259485 - 3259438
Alignment:
| Q |
54 |
tgcagtcatcacctatcatacaaatggagccatcaccaaagtccaata |
101 |
Q |
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| T |
3259485 |
tgcagtcattacctatcatggaaatggagccaccaccaaagtccaata |
3259438 |
T |
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