View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5804-8 (Length: 144)
Name: Solexa-NF5804-8
Description: NF5804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5804-8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 8e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 8940322 - 8940184
Alignment:
| Q |
3 |
caaaggtgatacttaaaattcaatcaaatgaactattgggtacaaaatatttttatttaatnnnnnnnnnngaactaaactatattgatcgagagacatt |
102 |
Q |
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| T |
8940322 |
caaaggtgatacttaaaattcaatcaaatgaactattgggtgcaaaatatttttatttaataaaaaaaa---aactaaactatattgatcgagagacatt |
8940226 |
T |
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| Q |
103 |
acactttcaacacattcaactcagcactacttcaagtttaac |
144 |
Q |
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| T |
8940225 |
acactttcaacacattcaactcagcactacttcaagtttaac |
8940184 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 8927875 - 8927828
Alignment:
| Q |
9 |
tgatacttaaaattcaatcaaatgaactattgggtacaaaatattttta |
57 |
Q |
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| T |
8927875 |
tgatacataaaattcaatcaaaagaactaatgggtac-aaatattttta |
8927828 |
T |
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