View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5806-1 (Length: 238)
Name: Solexa-NF5806-1
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5806-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47798848 - 47798621
Alignment:
| Q |
1 |
tatctagaatagtaattggacttagattaagaagcaagatataggtgatacatgtatagtactaaaagttgttaatttggaaatcaaaattattgaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47798848 |
tatctagaatagtaattggacttagattaagaagcaagatataggtgatatatgtatagtactaaaagttgttaatttggaaatcaaaattattgaatta |
47798749 |
T |
|
| Q |
101 |
tttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctgttgctgatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47798748 |
tttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctgttgctgatgtt |
47798649 |
T |
|
| Q |
201 |
ccattaattgaactcattgacgtctctg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47798648 |
ccattaattgaactcattgacgtctctg |
47798621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 39777384 - 39777511
Alignment:
| Q |
90 |
ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg |
189 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39777384 |
ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctg |
39777483 |
T |
|
| Q |
190 |
ttgctgatgttccattaattgaactcat |
217 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
39777484 |
ttgatgatgttccattaattgaactcat |
39777511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University