View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5806-12 (Length: 111)

Name: Solexa-NF5806-12
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5806-12
Solexa-NF5806-12
[»] chr6 (1 HSPs)
chr6 (8-108)||(324080-324180)
[»] chr7 (4 HSPs)
chr7 (13-47)||(46213841-46213875)
chr7 (8-52)||(43854953-43854997)
chr7 (8-43)||(40252044-40252079)
chr7 (8-43)||(46825214-46825249)
[»] chr8 (1 HSPs)
chr8 (11-43)||(7149233-7149265)
[»] chr4 (1 HSPs)
chr4 (8-43)||(46714912-46714947)
[»] chr3 (1 HSPs)
chr3 (8-43)||(2304192-2304227)
[»] chr2 (1 HSPs)
chr2 (8-43)||(43259949-43259984)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 324080 - 324180
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaagagagctaagtgcattcaatagagtgagtcaatattttagttcttgaaatcgtagaggtctgag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  324080 tatgctagttgataagttcaaataagccaattcaaagagagctaagtgcattcaatagagtgagtcaatattttagttcttgaaattgtagaggtctgag 324179  T
Q  108 a 108  Q
    |    
T  324180 a 324180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 46213841 - 46213875
Alignment:
Q  13 tagttgataagttcaaataagccaattcaaagaga 47  Q
    |||| ||||||||||||||||||||||||||||||    
T  46213841 tagtagataagttcaaataagccaattcaaagaga 46213875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 43854997 - 43854953
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaagagagctaa 52  Q
    |||| |||| |||||||||||||||||||||||||| ||| ||||    
T  43854997 tatgttagtagataagttcaaataagccaattcaaacagacctaa 43854953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 40252079 - 40252044
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaa 43  Q
    ||||||||| |||||| |||||||||||||||||||    
T  40252079 tatgctagtagataagctcaaataagccaattcaaa 40252044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 46825214 - 46825249
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaa 43  Q
    |||| |||| ||||||||||||||||||||||||||    
T  46825214 tatggtagtcgataagttcaaataagccaattcaaa 46825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 7149233 - 7149265
Alignment:
Q  11 gctagttgataagttcaaataagccaattcaaa 43  Q
    ||||||||||||||||||||||| |||||||||    
T  7149233 gctagttgataagttcaaataagtcaattcaaa 7149265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 46714947 - 46714912
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaa 43  Q
    ||||| ||| ||||||||||||||||||||||||||    
T  46714947 tatgccagtagataagttcaaataagccaattcaaa 46714912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 2304227 - 2304192
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaa 43  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  2304227 tatgctagtagatcagttcaaataagccaattcaaa 2304192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 43259949 - 43259984
Alignment:
Q  8 tatgctagttgataagttcaaataagccaattcaaa 43  Q
    ||||||||| ||||||||||||||||||||| ||||    
T  43259949 tatgctagtagataagttcaaataagccaatccaaa 43259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University