View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5806-13 (Length: 111)

Name: Solexa-NF5806-13
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5806-13
Solexa-NF5806-13
[»] scaffold0326 (1 HSPs)
scaffold0326 (8-109)||(106-207)
[»] chr6 (15 HSPs)
chr6 (8-109)||(5110497-5110598)
chr6 (8-109)||(5289856-5289957)
chr6 (5-82)||(31735684-31735762)
chr6 (5-82)||(29848266-29848343)
chr6 (5-82)||(610954-611031)
chr6 (5-82)||(13751115-13751192)
chr6 (2-82)||(19444043-19444123)
chr6 (5-82)||(13764564-13764641)
chr6 (8-76)||(24266982-24267050)
chr6 (11-82)||(18658426-18658497)
chr6 (5-72)||(24441139-24441206)
chr6 (13-77)||(16133438-16133502)
chr6 (6-76)||(22212275-22212346)
chr6 (31-81)||(19829716-19829766)
chr6 (5-81)||(24551045-24551118)
[»] chr5 (10 HSPs)
chr5 (8-109)||(41876283-41876384)
chr5 (12-82)||(17812617-17812687)
chr5 (8-77)||(8952816-8952885)
chr5 (5-81)||(10953186-10953262)
chr5 (12-82)||(24277367-24277437)
chr5 (12-82)||(24384776-24384846)
chr5 (24-82)||(20565833-20565891)
chr5 (5-56)||(21406470-21406522)
chr5 (9-71)||(25250662-25250725)
chr5 (9-71)||(25314447-25314510)
[»] chr3 (28 HSPs)
chr3 (8-109)||(3803096-3803197)
chr3 (8-109)||(11850377-11850478)
chr3 (11-102)||(54520701-54520792)
chr3 (5-82)||(13523172-13523249)
chr3 (5-82)||(20417292-20417369)
chr3 (5-82)||(23395821-23395898)
chr3 (5-82)||(18367519-18367596)
chr3 (6-77)||(10550483-10550554)
chr3 (5-82)||(3394763-3394840)
chr3 (8-81)||(6158612-6158685)
chr3 (5-82)||(13520542-13520619)
chr3 (5-82)||(14818238-14818315)
chr3 (5-81)||(42324985-42325061)
chr3 (8-81)||(37038033-37038106)
chr3 (5-73)||(12275812-12275880)
chr3 (5-65)||(14250895-14250955)
chr3 (17-81)||(14642314-14642378)
chr3 (13-77)||(17548317-17548381)
chr3 (8-81)||(12512582-12512655)
chr3 (5-81)||(11886435-11886512)
chr3 (5-82)||(52213238-52213315)
chr3 (5-73)||(52338735-52338803)
chr3 (12-82)||(6155854-6155925)
chr3 (5-82)||(19569084-19569161)
chr3 (5-72)||(35065346-35065415)
chr3 (5-72)||(41173137-41173206)
chr3 (81-108)||(13179443-13179470)
chr3 (33-72)||(14153236-14153275)
[»] chr4 (21 HSPs)
chr4 (8-102)||(49547966-49548060)
chr4 (8-82)||(2584972-2585046)
chr4 (6-82)||(4615827-4615903)
chr4 (8-82)||(13446669-13446743)
chr4 (5-81)||(51992735-51992811)
chr4 (8-82)||(6511791-6511865)
chr4 (5-82)||(14933202-14933279)
chr4 (5-77)||(27027949-27028021)
chr4 (9-82)||(21061743-21061817)
chr4 (5-82)||(14942408-14942485)
chr4 (5-82)||(15448172-15448249)
chr4 (5-81)||(9871330-9871406)
chr4 (9-77)||(20899526-20899594)
chr4 (31-81)||(9638245-9638295)
chr4 (17-82)||(18229883-18229948)
chr4 (12-82)||(10704719-10704789)
chr4 (12-82)||(10918489-10918559)
chr4 (12-82)||(14630093-14630163)
chr4 (5-82)||(16026849-16026925)
chr4 (81-109)||(13446754-13446782)
chr4 (5-75)||(20773-20844)
[»] scaffold0273 (1 HSPs)
scaffold0273 (5-82)||(6834-6911)
[»] chr8 (17 HSPs)
chr8 (5-82)||(22584496-22584573)
chr8 (5-82)||(23947413-23947491)
chr8 (9-82)||(23888942-23889015)
chr8 (5-82)||(17907730-17907808)
chr8 (5-82)||(20454453-20454530)
chr8 (5-81)||(39695292-39695368)
chr8 (5-82)||(22244616-22244694)
chr8 (17-82)||(20455222-20455287)
chr8 (17-82)||(20460200-20460265)
chr8 (5-60)||(17217801-17217857)
chr8 (17-82)||(19882191-19882256)
chr8 (7-81)||(25849210-25849284)
chr8 (5-76)||(42266361-42266433)
chr8 (12-82)||(22318716-22318786)
chr8 (81-111)||(22584455-22584485)
chr8 (12-82)||(31723370-31723440)
chr8 (45-82)||(15635941-15635978)
[»] chr7 (26 HSPs)
chr7 (8-82)||(3289583-3289657)
chr7 (5-82)||(8757157-8757234)
chr7 (5-82)||(40555504-40555581)
chr7 (5-82)||(11053844-11053921)
chr7 (5-81)||(10660023-10660099)
chr7 (5-81)||(36705432-36705508)
chr7 (8-82)||(832784-832858)
chr7 (8-82)||(1197964-1198038)
chr7 (8-81)||(17071051-17071124)
chr7 (14-82)||(21735263-21735331)
chr7 (17-82)||(14191850-14191915)
chr7 (5-81)||(47094292-47094368)
chr7 (14-69)||(13407995-13408050)
chr7 (12-82)||(15096446-15096516)
chr7 (17-67)||(836857-836907)
chr7 (17-67)||(1202037-1202087)
chr7 (12-82)||(11309504-11309574)
chr7 (24-82)||(15139355-15139413)
chr7 (17-82)||(14189056-14189121)
chr7 (5-69)||(33001174-33001239)
chr7 (5-72)||(46386853-46386922)
chr7 (21-81)||(59182-59242)
chr7 (18-82)||(4325283-4325347)
chr7 (14-82)||(13865147-13865215)
chr7 (9-76)||(17130510-17130578)
chr7 (6-72)||(15281477-15281543)
[»] chr1 (22 HSPs)
chr1 (5-82)||(18275129-18275206)
chr1 (2-81)||(19761989-19762068)
chr1 (7-82)||(52983361-52983436)
chr1 (5-82)||(21181086-21181163)
chr1 (5-77)||(18823820-18823892)
chr1 (5-81)||(38057415-38057491)
chr1 (17-77)||(51476202-51476262)
chr1 (12-82)||(10813284-10813354)
chr1 (5-70)||(7792625-7792690)
chr1 (5-82)||(18270475-18270552)
chr1 (13-77)||(13528560-13528624)
chr1 (5-82)||(44822882-44822959)
chr1 (5-72)||(42696934-42697002)
chr1 (5-82)||(16400881-16400959)
chr1 (17-81)||(22349812-22349876)
chr1 (5-76)||(45754669-45754741)
chr1 (11-82)||(13302007-13302078)
chr1 (5-72)||(20634401-20634470)
chr1 (6-72)||(20587896-20587964)
chr1 (6-72)||(20592434-20592502)
chr1 (5-72)||(1642654-1642721)
chr1 (33-72)||(21046815-21046854)
[»] scaffold0309 (2 HSPs)
scaffold0309 (5-81)||(6120-6196)
scaffold0309 (5-81)||(8272-8348)
[»] scaffold0188 (1 HSPs)
scaffold0188 (5-77)||(403-475)
[»] scaffold0413 (1 HSPs)
scaffold0413 (5-82)||(10890-10967)
[»] scaffold0490 (1 HSPs)
scaffold0490 (5-81)||(5038-5114)
[»] scaffold0181 (1 HSPs)
scaffold0181 (18-82)||(34152-34216)
[»] scaffold2046 (1 HSPs)
scaffold2046 (5-82)||(324-401)
[»] scaffold0962 (1 HSPs)
scaffold0962 (9-82)||(1290-1363)
[»] scaffold0453 (1 HSPs)
scaffold0453 (5-82)||(3249-3326)
[»] scaffold0321 (1 HSPs)
scaffold0321 (8-81)||(766-839)
[»] scaffold0065 (1 HSPs)
scaffold0065 (8-73)||(53406-53471)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-82)||(59569-59634)
[»] scaffold0630 (1 HSPs)
scaffold0630 (5-81)||(8276-8352)
[»] scaffold0220 (3 HSPs)
scaffold0220 (5-81)||(15976-16052)
scaffold0220 (17-81)||(13170-13234)
scaffold0220 (9-76)||(17627-17695)
[»] scaffold0149 (1 HSPs)
scaffold0149 (5-81)||(20861-20937)
[»] scaffold0117 (1 HSPs)
scaffold0117 (5-77)||(40991-41063)
[»] scaffold0007 (1 HSPs)
scaffold0007 (5-81)||(159714-159790)
[»] scaffold0429 (1 HSPs)
scaffold0429 (9-76)||(2757-2824)
[»] scaffold0607 (1 HSPs)
scaffold0607 (5-82)||(2920-2997)
[»] scaffold0056 (1 HSPs)
scaffold0056 (5-82)||(66225-66302)
[»] scaffold0008 (2 HSPs)
scaffold0008 (5-82)||(12271-12348)
scaffold0008 (25-82)||(136378-136435)
[»] scaffold0108 (1 HSPs)
scaffold0108 (5-81)||(5629-5705)
[»] chr2 (9 HSPs)
chr2 (13-81)||(18389061-18389129)
chr2 (5-81)||(25045217-25045293)
chr2 (2-77)||(6478066-6478141)
chr2 (5-82)||(27860498-27860575)
chr2 (5-82)||(44071705-44071782)
chr2 (5-82)||(27851792-27851869)
chr2 (12-82)||(3538960-3539030)
chr2 (5-75)||(10897555-10897626)
chr2 (33-72)||(19358178-19358217)
[»] scaffold0338 (1 HSPs)
scaffold0338 (5-82)||(3706-3783)
[»] scaffold0328 (1 HSPs)
scaffold0328 (8-81)||(19408-19481)
[»] scaffold0070 (1 HSPs)
scaffold0070 (5-82)||(8271-8348)
[»] scaffold0107 (1 HSPs)
scaffold0107 (5-77)||(3092-3164)
[»] scaffold0126 (1 HSPs)
scaffold0126 (13-82)||(6021-6090)
[»] scaffold0123 (1 HSPs)
scaffold0123 (21-82)||(2039-2100)
[»] scaffold0042 (1 HSPs)
scaffold0042 (5-72)||(28492-28560)
[»] scaffold0002 (2 HSPs)
scaffold0002 (5-81)||(397708-397784)
scaffold0002 (81-108)||(127518-127545)
[»] scaffold1186 (1 HSPs)
scaffold1186 (12-82)||(978-1048)
[»] scaffold0409 (2 HSPs)
scaffold0409 (9-82)||(444-518)
scaffold0409 (9-82)||(8699-8773)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-82)||(187220-187290)
[»] scaffold1662 (1 HSPs)
scaffold1662 (5-72)||(187-256)
[»] scaffold0737 (1 HSPs)
scaffold0737 (5-72)||(5479-5548)
[»] scaffold0308 (1 HSPs)
scaffold0308 (17-81)||(12558-12622)
[»] scaffold0010 (1 HSPs)
scaffold0010 (5-72)||(127187-127255)
[»] scaffold0445 (1 HSPs)
scaffold0445 (12-82)||(2694-2765)
[»] scaffold0111 (2 HSPs)
scaffold0111 (33-72)||(13300-13339)
scaffold0111 (33-72)||(19567-19606)
[»] scaffold0075 (1 HSPs)
scaffold0075 (5-75)||(60472-60543)


Alignment Details
Target: scaffold0326 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 207 - 106
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  207 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaacaatatacattttccacataatatatgtagc 108  T
Q  108 tt 109  Q
    ||    
T  107 tt 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 5110598 - 5110497
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5110598 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaacaatatacattttccacataatatatgtagc 5110499  T
Q  108 tt 109  Q
    ||    
T  5110498 tt 5110497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 5289957 - 5289856
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5289957 cagagacagcaacataaacaacttgcaacatagcaacggtaataataacaactcgaatgatataaacaacaatatacattttccacataatatatgtagc 5289858  T
Q  108 tt 109  Q
    ||    
T  5289857 tt 5289856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 31735762 - 31735684
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||||| |||| || ||| ||||||||||||||||||||| | |||||||||||||||||||||    
T  31735762 cagcagagacagcaacataaaacaacttgtaacatagcaacattaataataacaatttgaatgatataaacaacaatat 31735684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 29848343 - 29848266
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  29848343 cagcagggacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacaatat 29848266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 610954 - 611031
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  610954 cagcagggacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 611031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 13751192 - 13751115
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||| ||||||||| ||||    
T  13751192 cagcagagacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgaaataaacaacgatat 13751115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 19444123 - 19444043
Alignment:
Q  2 cagcagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||  |||||||||||| |||| |||||| |||||| |||||||| ||||||| |||||||||||||||| ||||    
T  19444123 cagcagcagcaacagcaacataagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaacgatat 19444043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 13764564 - 13764641
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| ||||  ||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  13764564 cagcagggacaacaacataagcaactagcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 13764641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 24266982 - 24267050
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    ||||||||||||||||| |||| |||||| || ||| |||||||| ||||||| |||||||||||||||    
T  24266982 cagagacagcaacataagcaacttgcaacataacaatattaataacaacaacttgaatgatataaacaa 24267050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 18658426 - 18658497
Alignment:
Q  11 agacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| |||||||| |||  |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  18658426 agacaacaacataagcaatttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 18658497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 24441139 - 24441206
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| |||||||| |||| |||||| |||||| |||||||||||||||| ||||| |||||    
T  24441139 cagcagagacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatggtataa 24441206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 16133502 - 16133438
Alignment:
Q  13 acagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||||| |||  |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  16133502 acagcaacataagcaaattgcaacatagcaatattaataacaacaacttgaatgatataaacaac 16133438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 22212346 - 22212275
Alignment:
Q  6 agcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    ||||||| |||||||||||| |||| ||||||  | |||||| ||||||||||||| |||||||||||||||    
T  22212346 agcagaggcagcaacataaaacaacttgcaacacaacaacatcaataataacaacttgaatgatataaacaa 22212275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 19829766 - 19829716
Alignment:
Q  31 tgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||    
T  19829766 tgcaacatagcaacatcaataatatcaacttgaatgatataaacaataata 19829716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 24551118 - 24551045
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| ||||||||| | | |||||| ||||||||| ||||||   |||| ||||||||||||||| ||||    
T  24551118 cagcagagacatcaacataaatatcttgcaacatagcaacatcaataat---aactagaatgatataaacaataata 24551045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 41876384 - 41876283
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41876384 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaacaatatacattttccacataatatatgtagc 41876285  T
Q  108 tt 109  Q
    ||    
T  41876284 tt 41876283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 17812617 - 17812687
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  17812617 gacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 17812687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 8952885 - 8952816
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||| |||||||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  8952885 cagagacaacaacataagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaac 8952816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 10953186 - 10953262
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| ||||||||||| | |||||| ||||||||| || |||||||||| ||||| ||||||||| ||||    
T  10953186 cagcagagacaacaacataaacatcttgcaacatagcaacatcaacaataacaacttgaatggtataaacaataata 10953262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 24277437 - 24277367
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| |||||||| |||| |||||| |||||| |||||||||||||||| ||||| |||||||||| ||||    
T  24277437 gacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatggtataaacaacgatat 24277367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 24384776 - 24384846
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| |||||||| |||| |||||| |||||| |||||||||||||||| ||||| |||||||||| ||||    
T  24384776 gacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatggtataaacaacgatat 24384846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 20565833 - 20565891
Alignment:
Q  24 aacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||||| || |||||| || || ||||||||||||||||| |||||||||||    
T  20565833 aacaacttgcaacataacaacataaacaacaacaactcgaatgatatgaacaacaatat 20565891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 21406522 - 21406470
Alignment:
Q  5 cagcagagacagcaacata-aacaacctgcaacgtagcaacattaataataac 56  Q
    ||||||||||||||||||| |||||| || | | |||||||||||||||||||    
T  21406522 cagcagagacagcaacatacaacaacttgaatcatagcaacattaataataac 21406470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 25250725 - 25250662
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatata 71  Q
    ||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| | | ||||||||    
T  25250725 agagacaacaacataaaacaacttgcaacatagcaacattaataacaacaaattggatgatata 25250662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 25314510 - 25314447
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatata 71  Q
    ||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| | | ||||||||    
T  25314510 agagacaacaacataaaacaacttgcaacatagcaacattaataacaacaaattggatgatata 25314447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 3803096 - 3803197
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3803096 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaacaatatacattttccacataatatatgtagc 3803195  T
Q  108 tt 109  Q
    ||    
T  3803196 tt 3803197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 11850478 - 11850377
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatatgtagc 107  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  11850478 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactagaatgatataaacaacaatatacattttccacataatatatgtagc 11850379  T
Q  108 tt 109  Q
    ||    
T  11850378 tt 11850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 54520701 - 54520792
Alignment:
Q  11 agacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatat 102  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  54520701 agacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaagaatatacattttccacataatatat 54520792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 13523249 - 13523172
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  13523249 cagcagagacagcaacataaacaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 13523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 20417292 - 20417369
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||||||||| |||||| || ||| |||||||||||||||| |||||||||||||||||||||    
T  20417292 cagcagagacaacaacataaacaacttgcaacatatcaatattaataataacaacttgaatgatataaacaacaatat 20417369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 23395898 - 23395821
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||||||||| |||||  || |||| |||||||||||||||||||||||||||||||||||||    
T  23395898 cagcagagacaacaacataaacaacttgcaatataacaacgttaataataacaactcgaatgatataaacaacaatat 23395821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 18367596 - 18367519
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||| |||| |||||| || ||| |||||||||||||||| |||||||||||||||| ||||    
T  18367596 cagcagagacagcaacataagcaacttgcaacataacaatattaataataacaacttgaatgatataaacaacgatat 18367519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 10550483 - 10550554
Alignment:
Q  6 agcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||| |||||||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||    
T  10550483 agcaaagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaac 10550554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 3394840 - 3394763
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  3394840 cagcagaaacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 3394763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 6158612 - 6158685
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||| ||||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  6158612 cagaaacagcaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 6158685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 13520619 - 13520542
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| |||||||| |||| |||||| |||||| |||||||||||||| | |||||||||||||||| ||||    
T  13520619 cagcagagacaacaacataagcaacttgcaacatagcaatattaataataacaatttgaatgatataaacaacgatat 13520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 14818238 - 14818315
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||| |||| |||||   ||||| |||||||||||||||| |||||||||||||||| ||||    
T  14818238 cagcagagacagcaacataagcaacttgcaatacagcaatattaataataacaacttgaatgatataaacaacgatat 14818315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 42325061 - 42324985
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  42325061 cagcagaaacatcaacataaacatcttgcaacatagcaacatgaataataacaacttgaatgatataaacaataata 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 37038033 - 37038106
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||| ||||||||||||||| | |||||| ||||||||| ||||||||||| | ||||||||||||||| ||||    
T  37038033 cagaaacagcaacataaacatcttgcaacatagcaacatcaataataacaatttgaatgatataaacaataata 37038106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 12275812 - 12275880
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaa 73  Q
    ||||||| |||||||||||| |||| || ||| |||||| |||||||||||||||| ||||||||||||    
T  12275812 cagcagaaacagcaacataagcaacttgaaacatagcaatattaataataacaacttgaatgatataaa 12275880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 14250955 - 14250895
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaat 65  Q
    ||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||| ||||    
T  14250955 cagcagagacagcaacataaacatcttgcaacatagcaacatcaataataacaacttgaat 14250895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 14642378 - 14642314
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  14642378 caacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 14642314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 17548381 - 17548317
Alignment:
Q  13 acagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  17548381 acagcaacataagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaac 17548317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 12512655 - 12512582
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||| || |||||||||| | |||||| ||||||||| || |||||||||| ||||||||||||||| ||||    
T  12512655 cagagatagaaacataaacatcttgcaacatagcaacatcaacaataacaacttgaatgatataaacaataata 12512582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 11886512 - 11886435
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||||||||||||| |||| |||||| |||| || |||||| ||||||||   ||||||||||||| ||||    
T  11886512 cagcagagacagcaacataaagcaacttgcaacatagccacgttaatactaacaacttagatgatataaacaataata 11886435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 52213315 - 52213238
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||| |||||||| |||| |||||  ||||||| | ||||||||||| | |||||||||||||||| ||||    
T  52213315 cagcagaaacaacaacataagcaacttgcaaaatagcaacttcaataataacaatttgaatgatataaacaacgatat 52213238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 52338803 - 52338735
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaa 73  Q
    ||||||||||| |||  ||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||    
T  52338803 cagcagagacatcaatttaatcaacttgcaacatagcaatattaataacaacaacttgaatgatataaa 52338735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 6155854 - 6155925
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataat-aacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || ||||||||| ||| ||||||| ||||||||| |||||||||||    
T  6155854 gacagcaacaataacaacttgcaacttaacaacattaacaatcaacaacttgaatgatatgaacaacaatat 6155925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 19569161 - 19569084
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||  |||||| |||| | || ||||||||| |  || |||| ||||||||| |||||||||||    
T  19569161 cagcagagacagcaacaataacaacttgcatcataacaacattaacagcaataacttgaatgatatgaacaacaatat 19569084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 35065415 - 35065346
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||| |||||| |  |||| ||||| ||||||||||||||||| |||||||||||    
T  35065415 cagcagagacaacaacatacaacaacttcacaacatagcatcattaataataacaacttgaatgatataa 35065346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 41173206 - 41173137
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||| |||||| |  |||| ||||| ||||||||||||||||| |||||||||||    
T  41173206 cagcagagacaacaacatacaacaacttcacaacatagcatcattaataataacaacttgaatgatataa 41173137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 108
Target Start/End: Original strand, 13179443 - 13179470
Alignment:
Q  81 atacatttttcacataatatatgtagct 108  Q
    ||||||||||||||||||||||||||||    
T  13179443 atacatttttcacataatatatgtagct 13179470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 14153275 - 14153236
Alignment:
Q  33 caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||    
T  14153275 caacatagcatcattaataataacaacttgaatgatataa 14153236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 5e-35; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 49548060 - 49547966
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatatacatttttcacataatatat 102  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  49548060 cagagacagcaacataaacaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaagaatatacattttccacataatatat 49547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 2585046 - 2584972
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  2585046 cagagacagcaacataaacaacttgcaacataacaacgttaataataacaactcgaatgatataaacaacaatat 2584972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 4615903 - 4615827
Alignment:
Q  6 agcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  4615903 agcagagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 4615827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 13446669 - 13446743
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  13446669 cagagacaacaacataagcaacttgcaacatagcaacgttaataataacaactcgaatgatataaacaacgatat 13446743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 51992735 - 51992811
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||||||||||||||| | |||||| ||||||||| || |||||||||| ||||||||||||||| ||||    
T  51992735 cagcagagacagcaacataaacatcttgcaacatagcaacatcaacaataacaacttgaatgatataaacaataata 51992811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 6511791 - 6511865
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| || ||||||||||||| || ||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  6511791 cagaggcaacaacataaacaacttgaaatatagcaacgttaataataacaactcgaatgatataaacaacaatat 6511865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 14933279 - 14933202
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| |||||||||||| |||| |||||| |||||| |||||||||||||||| ||||||| |||||||| ||||    
T  14933279 cagcagaaacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatgtaaacaacgatat 14933202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 27027949 - 27028021
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    ||||||| ||| |||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||    
T  27027949 cagcagaaacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaac 27028021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 21061743 - 21061817
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||| |||||||||||||| ||||||    
T  21061743 agagacaacaacataaaacaacttgcaacatagcaacattaataacaacaacttgaatgatataaacatcaatat 21061817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 14942485 - 14942408
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||| |||||||| |||| |||||| |||||| |||||||||||||||| ||||||| |||||||| ||||    
T  14942485 cagcagaaacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatgtaaacaacgatat 14942408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 15448249 - 15448172
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| |||||||| |||| |||||| ||| || ||||||||||| |||| |||||||||||||||| ||||    
T  15448249 cagcagagacaacaacataagcaacttgcaacatagaaatattaataataaaaacttgaatgatataaacaacgatat 15448172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 9871406 - 9871330
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||| ||||| ||||||||||||| || |||||||||||| ||||    
T  9871406 cagcagaaacaacaacataaacatcttgcaacatagaaacatcaataataacaacttgactgatataaacaataata 9871330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 20899594 - 20899526
Alignment:
Q  9 agagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    ||||||| |||||||| |||| |||||| || ||| |||||||| ||||||| ||||||||||||||||    
T  20899594 agagacaacaacataagcaacttgcaacataacaatattaataacaacaacttgaatgatataaacaac 20899526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 9638245 - 9638295
Alignment:
Q  31 tgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  9638245 tgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 9638295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 18229883 - 18229948
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||| |||||| |||||| ||||||| |||||||| ||||||||  |||||| ||||    
T  18229883 caacataaacaacttgcaacatagcaatattaatattaacaacttgaatgataataacaacgatat 18229948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 10704719 - 10704789
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| ||||| || |||| |||||| || ||| |||||||||||||||| |||| ||||||||||| ||||    
T  10704719 gacaacaacaaaagcaacttgcaacataacaatattaataataacaacttgaattatataaacaacgatat 10704789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 10918489 - 10918559
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| ||||| || |||| |||||| || ||| |||||||||||||||| |||| ||||||||||| ||||    
T  10918489 gacaacaacaaaagcaacttgcaacataacaatattaataataacaacttgaattatataaacaacgatat 10918559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 14630093 - 14630163
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || |||||| || || ||||||| ||||||||| |||||||||||    
T  14630093 gacagcaacaataacaacttgcaacataacaacatcaacaacaacaacttgaatgatatgaacaacaatat 14630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 16026925 - 16026849
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| |||||||| |||| |||| | || ||||||||| |||| ||||| ||||||||| |||||||||||    
T  16026925 cagcaaagacaacaacataa-caacttgcatcataacaacattaacaatagcaacttgaatgatatgaacaacaatat 16026849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 13446754 - 13446782
Alignment:
Q  81 atacatttttcacataatatatgtagctt 109  Q
    |||||||||||||||||||||||||||||    
T  13446754 atacatttttcacataatatatgtagctt 13446782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 20773 - 20844
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaaca 75  Q
    ||||||||||||||||||||| |||| | || | |||| | ||||||| |||||||| | ||||||||||||    
T  20773 cagcagagacagcaacataaagcaacttacatcatagccagattaatactaacaacttggatgatataaaca 20844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 62; Significance: 3e-27; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 6834 - 6911
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  6834 cagcagagacagcaacataagcaacttgcaacatagcaacattaataataacaactcaaatgatataaacaacaatat 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 7e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 22584573 - 22584496
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  22584573 cagcagagacagcaacataaacaacttgcaacatagcaacattaataataaccacttgaatgatataaacaacgatat 22584496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 23947413 - 23947491
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  23947413 cagcagagacagcaacataaaacaacttgcaacatagcaacattaataataacaacttgaatgatataaacaataatat 23947491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 23888942 - 23889015
Alignment:
Q  9 agagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||||||||||| ||||||  ||| |||||||||||||||||| ||| |||||||||||||||||    
T  23888942 agagacagcaacataaacaacttgcaacacagctacattaataataacaacttgaacgatataaacaacaatat 23889015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 17907808 - 17907730
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||| |||||||||||    
T  17907808 cagcagagacaacaacataaaacaacttgcaacatagcaacattaataatatcaacttgaatgatatgaacaacaatat 17907730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 20454453 - 20454530
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  20454453 cagcagggacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 20454530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 39695368 - 39695292
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  39695368 cagcagaaacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 39695292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 22244616 - 22244694
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||||| |||| |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  22244616 cagcagagacatcaacataaaacaacttgcaacatagaaacattaataataacaacttgaaagatataaacaataatat 22244694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20455222 - 20455287
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  20455222 caacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 20455287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20460200 - 20460265
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  20460200 caacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 20460265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 17217801 - 17217857
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaact 60  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  17217801 cagcagagacagcaacataaaacaacttgcaacatagcaacattaataataacaact 17217857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19882191 - 19882256
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||  ||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  19882191 caacataagaaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 19882256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 25849284 - 25849210
Alignment:
Q  7 gcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||||  ||||||||| || | ||||||  |||||||| ||||||||||||| ||||||||||||||| ||||    
T  25849284 gcagagatggcaacataaccatcttgcaacacagcaacatcaataataacaacttgaatgatataaacaataata 25849210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 42266433 - 42266361
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    ||||||| ||| ||||||||| || | |||||| |||||||||  |||||||||||| |||||||||||||||    
T  42266433 cagcagaaacaacaacataaaacatcttgcaacatagcaacatcgataataacaacttgaatgatataaacaa 42266361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 22318786 - 22318716
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  | |||| |||||| || ||||||||| || ||||||| ||||||||| |||||||||||    
T  22318786 gacagcaacaatatcaacttgcaacataacaacattaacaacaacaacttgaatgatatgaacaacaatat 22318716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 22584485 - 22584455
Alignment:
Q  81 atacatttttcacataatatatgtagcttag 111  Q
    |||||||||||||||||||||||||||||||    
T  22584485 atacatttttcacataatatatgtagcttag 22584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 31723440 - 31723370
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||| | || ||||||||| || ||||||| ||||||||| |||||||||||    
T  31723440 gacagcaacaataacaacttgcatcataacaacattaacaacaacaacttgaatgatatgaacaacaatat 31723370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 15635978 - 15635941
Alignment:
Q  45 attaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  15635978 attaataataacaacttgaatgatataaacaacgatat 15635941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-23; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 3289657 - 3289583
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| ||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  3289657 cagagacaacaacataaacaacttgcaacatagcaacgtcaataataacaactcgaatgatataaacaacaatat 3289583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 8757234 - 8757157
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  8757234 cagcagagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 8757157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 40555581 - 40555504
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  40555581 cagcagagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 40555504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 11053844 - 11053921
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| ||||||||| ||| |||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  11053844 cagcatagacaacaacataaagaacttgcaatatagcaacattaataataacaacttgaatgatataaacaacaatat 11053921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 10660099 - 10660023
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||| |||||||||| |||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  10660099 cagcaaagacagcaacgtaaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 10660023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 36705508 - 36705432
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| ||||||||||| | |||||| ||||||||| || |||||||||| ||||||||||||||| ||||    
T  36705508 cagcagagacaacaacataaacatcttgcaacatagcaacatgaacaataacaacttgaatgatataaacaataata 36705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 832858 - 832784
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||| ||| ||||    
T  832858 cagagacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaaaaacgatat 832784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 1198038 - 1197964
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||| ||| ||||    
T  1198038 cagagacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaaaaacgatat 1197964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 17071124 - 17071051
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  17071124 cagaaacatcaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 17071051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 21735331 - 21735263
Alignment:
Q  14 cagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||  |||||| ||||    
T  21735331 cagcaacataaacaacttgcaacatagcaatattaataataacaacttgaatgataataacaacgatat 21735263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 14191915 - 14191850
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||| ||||||  ||||| |||||||||||||||| |||||||||||||||| ||||    
T  14191915 caacataagcaacttgcaacaaagcaatattaataataacaacttgaatgatataaacaacgatat 14191850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 47094292 - 47094368
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| |||||||||  |||| ||||||| ||||||||||||||| ||||    
T  47094292 cagcagaaacaacaacataaacatcttgcaacatagcaacatcgataacaacaacttgaatgatataaacaataata 47094368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 13407995 - 13408050
Alignment:
Q  14 cagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgata 69  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||    
T  13407995 cagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgata 13408050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 15096516 - 15096446
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || ||||||||| || ||||||| ||||||||| |||||||||||    
T  15096516 gacagcaacaataacaacttgcaacataacaacattaacaacaacaacttgaatgatatgaacaacaatat 15096446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 836907 - 836857
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatga 67  Q
    |||||||| |||| |||||| |||||| |||||||||||||||| ||||||    
T  836907 caacataagcaacttgcaacatagcaatattaataataacaacttgaatga 836857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 1202087 - 1202037
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatga 67  Q
    |||||||| |||| |||||| |||||| |||||||||||||||| ||||||    
T  1202087 caacataagcaacttgcaacatagcaatattaataataacaacttgaatga 1202037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 11309504 - 11309574
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| |||||||| |||| |||  | || ||| |||||||||||||||| |||| ||||||||||||||||    
T  11309504 gacaacaacataagcaacttgccccataacaatattaataataacaacttgaataatataaacaacaatat 11309574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15139355 - 15139413
Alignment:
Q  24 aacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||||| || ||||||||| | |||||||| || ||||||||||||||||||    
T  15139355 aacaacttgcaacataacaacattaacactaacaacttgattgatataaacaacaatat 15139413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 14189121 - 14189056
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||| |||| | ||||  ||||| |||||||||||||||| ||| |||||||||||| ||||    
T  14189121 caacataagcaacttacaacaaagcaatattaataataacaacttgaaagatataaacaacgatat 14189056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 33001174 - 33001239
Alignment:
Q  5 cagcagagacagcaacat-aaacaacctgcaacgtagcaacattaataataacaactcgaatgata 69  Q
    |||||||||||||||||| ||||||| |||||| ||||||| ||||||| || |||| | ||||||    
T  33001174 cagcagagacagcaacataaaacaacttgcaacatagcaacgttaataacaataacttggatgata 33001239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 46386922 - 46386853
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||||||||||| |||||| |  |||| ||||| ||||||||||||||||| ||||| |||||    
T  46386922 cagcagagacagcaacatacaacaacttcacaacatagcatcattaataataacaacttgaatggtataa 46386853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 59242 - 59182
Alignment:
Q  21 ataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| | |||||| ||||||||| ||||||||||| |  |||||||||||||| ||||    
T  59242 ataaacatcatgcaacatagcaacatcaataataacaatttaaatgatataaacaataata 59182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4325283 - 4325347
Alignment:
Q  18 aacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| |||| |||||| ||| || |||||||||||||||| ||||||||  |||||| ||||    
T  4325283 aacataagcaacttgcaacatagaaatattaataataacaacttgaatgataataacaacgatat 4325347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 13865215 - 13865147
Alignment:
Q  14 cagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| || | |||||| |||||| ||||||||||||||||  |||||||  |||||| ||||    
T  13865215 cagcaacataagcagcttgcaacatagcaatattaataataacaacttcaatgataataacaacgatat 13865147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 17130578 - 17130510
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    ||||||| ||||||||| |||| | |||| |||| ||||||||| |||||||| | |||||||||||||    
T  17130578 agagacaacaacataaaacaacttacaacatagccacattaatactaacaacttggatgatataaacaa 17130510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 15281477 - 15281543
Alignment:
Q  6 agcagagacagcaacat-aaacaacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||||||||| || ||| ||||||| |||||| |||||||||| |||||||||||| | |||||||||    
T  15281477 agcagagacaacaccattaaacaacttgcaacatagcaacatt-ataataacaacttggatgatataa 15281543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 18275129 - 18275206
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| ||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  18275129 cagcagggacaacaacataaacaacttgcaacatagcaacgttaataataacaacttgaatgatataaacaacaatat 18275206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 19762068 - 19761989
Alignment:
Q  2 cagcagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||||||||||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||| ||| ||||    
T  19762068 cagcagcagagacatcaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataatcaataata 19761989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 52983361 - 52983436
Alignment:
Q  7 gcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||| |||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  52983361 gcagagacatcaacataagcaacttgcaacataacaacattaataataacaacttgaatgatataaacaacgatat 52983436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 21181163 - 21181086
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  21181163 cagcagggacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 21181086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 18823820 - 18823892
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||||||||||||| |||| |||||| || ||| |||||||| ||||||| ||||||||||||||||    
T  18823820 cagcagagacagcaacataagcaacttgcaacataacaatattaataacaacaacttgaatgatataaacaac 18823892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 38057491 - 38057415
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  38057491 cagcagaaacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 38057415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 51476202 - 51476262
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||    
T  51476202 caacataaacaacttgcaacatagcaacattaataataacaacttgaataatataaacaac 51476262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 10813354 - 10813284
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  10813354 gacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaacgatat 10813284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 7792690 - 7792625
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatat 70  Q
    ||||| |||||||||||||| |||| |||||| |||||| |||||||||||||||| |||||||||    
T  7792690 cagcaaagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatat 7792625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 18270475 - 18270552
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| ||||||||||||| |||||| || |||| | ||||||||||||| |||||||||||| ||||||||    
T  18270475 cagcagggacaacaacataaacaacttgcaacataacaacgtaaataataacaactagaatgatataaaaaacaatat 18270552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 13528624 - 13528560
Alignment:
Q  13 acagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  13528624 acagcaacataagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaac 13528560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 44822959 - 44822882
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||| |||||||||  |||| |||||| |||  | |||||||||||||||| |||||||||||||||| ||||    
T  44822959 cagcagagatagcaacataggcaacttgcaacatagtgatattaataataacaacttgaatgatataaacaacgatat 44822882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 42696934 - 42697002
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||| |||| || | |||||||||    
T  42696934 cagcagagacaacaacataaaacaacttgcaacgtagcaacattaataacaacatcttggatgatataa 42697002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 16400881 - 16400959
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatga-tataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| ||| || |||||||||||||||| |||||| |||||||||| ||||    
T  16400881 cagcagggacaacaacataagcaacttgcaacatagaaatattaataataacaacttgaatgactataaacaacgatat 16400959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 22349812 - 22349876
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| | |||||| |||||||||  ||||||| |||| ||||||||||||||| ||||    
T  22349812 caacataaacatcttgcaacatagcaacatcgataataataacttgaatgatataaacaataata 22349876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 45754669 - 45754741
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    |||||||||| |||||||||| |||| || ||| |||| ||||||||| |||||||| | |||||||||||||    
T  45754669 cagcagagactgcaacataaatcaacttgtaacatagccacattaatactaacaacttggatgatataaacaa 45754741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 13302007 - 13302078
Alignment:
Q  11 agacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| |||||| || ||| |||||| || ||||| | |||||||||||| ||||||||| |||||||||||    
T  13302007 agacaacaacatcaaaaacttgcaacataacaacactgataataacaacttgaatgatatgaacaacaatat 13302078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 20634470 - 20634401
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||||||||||| |||||| |  |||| ||||| ||||||||||||||||| ||||| |||||    
T  20634470 cagcagagacagcaacatacaacaacttcacaacatagcatcattaataataacaacttgaatggtataa 20634401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 20587896 - 20587964
Alignment:
Q  6 agcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||||||||||||||||| |||||| |  |||| ||| | ||||||||||||||||| |||||||||||    
T  20587896 agcagagacagcaacatacaacaacttcacaacatagtatcattaataataacaacttgaatgatataa 20587964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 20592434 - 20592502
Alignment:
Q  6 agcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||||||||||||||||| |||||| |  |||| ||| | ||||||||||||||||| |||||||||||    
T  20592434 agcagagacagcaacatacaacaacttcacaacatagtatcattaataataacaacttgaatgatataa 20592502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 1642654 - 1642721
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||||||| | | |||| ||||| ||| || ||||||| || |||||||||||    
T  1642654 cagcagagacaacaacataaacatcttacaacatagcagcatcaacaataacatcttgaatgatataa 1642721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 21046854 - 21046815
Alignment:
Q  33 caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||    
T  21046854 caacatagcatcattaataataacaacttgaatgatataa 21046815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 53; Significance: 6e-22; HSPs: 2)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 6120 - 6196
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  6120 cagcagagacaacaacataaacaacttgcaacatagcaatattaataataataacttgaatgatataaacaacaata 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309; HSP #2
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 8272 - 8348
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  8272 cagcagagacaacaacataaacaacttgcaacatagcaatattaataataataacttgaatgatataaacaacaata 8348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 53; Significance: 6e-22; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 475 - 403
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||||||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||||||||    
T  475 cagcagagacagcaacataagcaacttgcaacatagcaatattaataataacaacttgaatgatataaacaac 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 10890 - 10967
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||| ||||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||||||    
T  10890 cagcagagacaacaacatagacaacttgcaacatagaaacattaataataacaacttgaatgatataaagaacaatat 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5038 - 5114
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| |||||||| |||| |||||| |||||| ||||||||||| |||| ||||||||||||||||||||    
T  5038 cagcagagacaacaacataagcaacttgcaacatagcaatattaataataataacttgaatgatataaacaacaata 5114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 34216 - 34152
Alignment:
Q  18 aacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  34216 aacataaacaactagcaacatagcaacattaataataacaacttgaatgatataaacaacaatat 34152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2046 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold2046
Description:

Target: scaffold2046; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 324 - 401
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| |||||||| |||| |||||| |||||| |||||||||||||||| |||||| ||||||||| ||||    
T  324 cagcagagacaacaacataagcaacttgcaacatagcaatattaataataacaacttgaatgaaataaacaacgatat 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 1363 - 1290
Alignment:
Q  9 agagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||||||| |||| | |||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  1363 agagacagcaacataagcaacttacaacatagcaatattaataataacaacttgaatgatataaacaacgatat 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 3249 - 3326
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||| |||||||||| ||||| |||||||||| ||||    
T  3249 cagcagagacaacaacataaacaacttgcaacatagcaatattaacaataacaacttgaatgttataaacaacgatat 3326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 839 - 766
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  839 cagagacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 53471 - 53406
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaa 73  Q
    |||||||||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||    
T  53471 cagagacagcaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaa 53406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 59569 - 59634
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||||    
T  59569 caacataaacaacttgcaacataacaacgttaataataacaactcgaatgatataaaaaacaatat 59634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 8276 - 8352
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  8276 cagcagaaacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 8352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 45; Significance: 4e-17; HSPs: 3)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 15976 - 16052
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  15976 cagcagaaacatcaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 16052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13170 - 13234
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| | |||||| ||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  13170 caacataaacatcttgcaacatagaaacatcaataataacaacttgaatgatataaacaataata 13234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 17627 - 17695
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    ||||||||||||||||| |||| |||||| |||| ||||||||| ||||| || | |||||||||||||    
T  17627 agagacagcaacataaaacaacttgcaacatagccacattaatactaacaccttggatgatataaacaa 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 20861 - 20937
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||| ||||    
T  20861 cagcagaaacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaatgatataaacaataata 20937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 41063 - 40991
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||| ||||||||||||| |||| |||||| || ||| |||||||||||||||| ||||||||||||||||    
T  41063 cagcagtgacagcaacataagcaacttgcaacatatcaatattaataataacaacttgaatgatataaacaac 40991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 159790 - 159714
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||||||||||||| |||||||| | |||||| |||||||||  |||||||||||| ||||||||||||||| ||||    
T  159790 cagcagagacagcagcataaacatcttgcaacatagcaacatcgataataacaacttgaatgatataaacaataata 159714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 2824 - 2757
Alignment:
Q  9 agagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaa 76  Q
    |||||||||||||||| |||| |||||| |||||| ||||| |||||||||| |||||||||||||||    
T  2824 agagacagcaacataagcaacttgcaacatagcaatattaaaaataacaacttgaatgatataaacaa 2757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 2920 - 2997
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| ||| || |||||||||||||||| |||||||||||||||| ||||    
T  2920 cagcagggacaacaacataagcaacttgcaacatagtaatattaataataacaacttgaatgatataaacaacgatat 2997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 66225 - 66302
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| |||||| |||||| |||||| || ||||||||||||||||||||  |||||||| |||||||||||    
T  66225 cagcaaagacaacaacatcaacaacttgcaacataacaacattaataataacaactttaatgatatgaacaacaatat 66302  T

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Target: scaffold0008 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 12348 - 12271
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||||||||||||| | |||||||||||||||| ||||    
T  12348 cagcagggacaacaacataagcaacttgcaacatagcaatattaataataacaatttgaatgatataaacaacgatat 12271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 136435 - 136378
Alignment:
Q  25 acaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| |||||| ||  ||||||||||| ||||||| ||||||||| |||||||||||    
T  136435 acaacttgcaacataataacattaataacaacaacttgaatgatatgaacaacaatat 136378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5629 - 5705
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||| ||||||||||| | |||||| ||||||||| ||||||||||||| |||| |||||||||| ||||    
T  5629 cagcagaaacaacaacataaacatcttgcaacatagcaacatcaataataacaacttgaattatataaacaataata 5705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 18389129 - 18389061
Alignment:
Q  13 acagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||||||| | |||||| |||||||||  |||||||||||| ||||||||||||||| ||||    
T  18389129 acagcaacataaacatcttgcaacatagcaacatcgataataacaacttgaatgatataaacaataata 18389061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 25045217 - 25045293
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||| ||||||||||||||  | |||||| ||||||||| ||||| ||||||| ||||||||||||||| ||||    
T  25045217 cagcagaaacagcaacataaacgtcttgcaacatagcaacatcaataacaacaacttgaatgatataaacaataata 25045293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 6478141 - 6478066
Alignment:
Q  2 cagcagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    |||||||||  ||||||| |||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  6478141 cagcagcagcaacagcaatataagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaac 6478066  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 27860498 - 27860575
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| |||||| |||||| |||||| || ||||| | |||||||||||| ||||||||| |||||||||||    
T  27860498 cagcaaagacaacaacatcaacaacttgcaacataacaacactgataataacaacttgaatgatatgaacaacaatat 27860575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 44071705 - 44071782
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| |||||| |||||| |||||| || ||||| |||||||||||||| ||| ||||| |||||||||||    
T  44071705 cagcaaagacaacaacatcaacaacttgcaacataacaacactaataataacaacttgaacgatatgaacaacaatat 44071782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 27851792 - 27851869
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||| ||||| |||||| || ||| |||||| || ||||| | |||||||||||| ||||||||| |||||||||||    
T  27851792 cagcaaagacaacaacatcaataacttgcaacataacaacactgataataacaacttgaatgatatgaacaacaatat 27851869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 3538960 - 3539030
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || |||||| || || ||||||| ||||||||| |||||||||||    
T  3538960 gacagcaacaacaacaacttgcaacataacaacatcaacaacaacaacttgaatgatatgaacaacaatat 3539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 10897626 - 10897555
Alignment:
Q  5 cagcagagacagcaacata-aacaacctgcaacgtagcaacattaataataacaactcgaatgatataaaca 75  Q
    ||||||||||| ||||||| |||||| || | | ||||||||||||||||||| ||| | ||| ||||||||    
T  10897626 cagcagagacaacaacatacaacaacttgaatcatagcaacattaataataaccacttggatggtataaaca 10897555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 19358178 - 19358217
Alignment:
Q  33 caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||    
T  19358178 caacatagcatcattaataataacaacttgaatgatataa 19358217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 3783 - 3706
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| |||| |||||||| |||| |||||| |||||| |||| |||||||||||  ||||||||||||||| ||||    
T  3783 cagcagggacaacaacataagcaacttgcaacatagcaatattagtaataacaacttaaatgatataaacaacgatat 3706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 19481 - 19408
Alignment:
Q  8 cagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    |||| ||| ||||||||||| | |||||| ||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  19481 cagaaacaacaacataaacatcttgcaacatagaaacatcaataataacaacttgaatgatataaacaataata 19408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 8271 - 8348
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||| ||||||||||||| |||| |||||| || ||| |||||||||||||||| ||||||||  |||||| ||||    
T  8271 cagcagggacagcaacataagcaacttgcaacatatcaatattaataataacaacttgaatgataataacaacgatat 8348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 3092 - 3164
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaac 77  Q
    ||||||||||| |||  ||| |||| |||||| |||||| |||||||| ||||||| ||||||||||||||||    
T  3092 cagcagagacatcaatttaagcaacttgcaacatagcaatattaataacaacaacttgaatgatataaacaac 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6021 - 6090
Alignment:
Q  13 acagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    |||||||||||| |||| |||||| ||| || |||||||||||||||| ||||||||  |||||| ||||    
T  6021 acagcaacataagcaacttgcaacatagaaatattaataataacaacttgaatgataataacaacgatat 6090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 2100 - 2039
Alignment:
Q  21 ataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||| |||||| |||||| |||||||||||||||| ||||||||  |||||| ||||    
T  2100 ataaacaacttgcaacatagcaatattaataataacaacttgaatgataataacaacgatat 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 28492 - 28560
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||| ||||||||||| |||| |||| | |||  |||||||||||||||||| |||||||||||    
T  28492 cagcagagatagcaacataaaacaacttgcagcatagtcacattaataataacaacttgaatgatataa 28560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 397708 - 397784
Alignment:
Q  5 cagcagagacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||  |||||||||||||   |||||  ||||||||| || |||||||||| ||||||||||||||| ||||    
T  397708 cagcagaggtagcaacataaacattttgcaaaatagcaacatcaagaataacaacttgaatgatataaacaataata 397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 108
Target Start/End: Complemental strand, 127545 - 127518
Alignment:
Q  81 atacatttttcacataatatatgtagct 108  Q
    ||||||||||||||||||||||||||||    
T  127545 atacatttttcacataatatatgtagct 127518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 978 - 1048
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || |||||| || || ||||||| ||||||||| |||||||||||    
T  978 gacagcaacaataacaacttgcaacataacaacatcaacaacaacaacttgaatgatatgaacaacaatat 1048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0409 (Bit Score: 31; Significance: 0.000000009; HSPs: 2)
Name: scaffold0409
Description:

Target: scaffold0409; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 444 - 518
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||||||||| |||| | |||||||||||||| |||||||||||||   |||||||| |||| |||||    
T  444 agagacaacaacataaaacaacttacaacgtagcaacatgaataataacaacttagatgatatacacaataatat 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0409; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 8699 - 8773
Alignment:
Q  9 agagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||| ||||||||| |||| | |||||||||||||| |||||||||||||   |||||||| |||| |||||    
T  8699 agagacaacaacataaaacaacttacaacgtagcaacatgaataataacaacttagatgatatacacaataatat 8773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 187290 - 187220
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaatat 82  Q
    ||||||||||  |||||| |||||| || |||||| || || ||||||| ||||||||| |||||||||||    
T  187290 gacagcaacaataacaacttgcaacataacaacatcaacaacaacaacttgaatgatatgaacaacaatat 187220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1662 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 256 - 187
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||| |||||| |  |||| ||||| ||||||||||||||||| |||||||||||    
T  256 cagcagagacaacaacatacaacaacttcacaacatagcatcattaataataacaacttgaatgatataa 187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 5548 - 5479
Alignment:
Q  5 cagcagagacagcaacata-aacaacctg-caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| ||||||| |||||| |  |||| ||||||||||||||||||||||| ||||| |||||    
T  5548 cagcagagacaacaacatacaacaacttcacaacatagcaacattaataataacaacttgaatggtataa 5479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12558 - 12622
Alignment:
Q  17 caacataaacaacctgcaacgtagcaacattaataataacaactcgaatgatataaacaacaata 81  Q
    ||||||||||| | |||||| || ||||||  ||||||| |||| ||||||||||||||| ||||    
T  12558 caacataaacatcttgcaacatatcaacatcgataataataacttgaatgatataaacaataata 12622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 127255 - 127187
Alignment:
Q  5 cagcagagacagcaacat-aaacaacctgcaacgtagcaacattaataataacaactcgaatgatataa 72  Q
    ||||||||||| |||||| ||||| | |||||| ||||||| ||||||| ||||||| | |||||||||    
T  127255 cagcagagacaacaacataaaacagcttgcaacatagcaactttaataacaacaacttggatgatataa 127187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 2765 - 2694
Alignment:
Q  12 gacagcaacataaacaacctgcaacgtagcaac-attaataataacaactcgaatgatataaacaacaatat 82  Q
    |||| ||||||||||||| |||||| ||||||| | | |||||||| | | ||||||||| |||||||||||    
T  2765 gacatcaacataaacaacttgcaacatagcaacaactgataataacgatttgaatgatatgaacaacaatat 2694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 28; Significance: 0.0000005; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 13339 - 13300
Alignment:
Q  33 caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||    
T  13339 caacatagcatcattaataataacaacttgaatgatataa 13300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 19606 - 19567
Alignment:
Q  33 caacgtagcaacattaataataacaactcgaatgatataa 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||    
T  19606 caacatagcatcattaataataacaacttgaatgatataa 19567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 60472 - 60543
Alignment:
Q  5 cagcagagacagcaacataaa-caacctgcaacgtagcaacattaataataacaactcgaatgatataaaca 75  Q
    ||||||||||||||||||||| |||| | || | |||| | ||||||| |||||||| | ||||||||||||    
T  60472 cagcagagacagcaacataaagcaacttacatcatagccagattaatactaacaacttggatgatataaaca 60543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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