View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5806-6 (Length: 136)
Name: Solexa-NF5806-6
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5806-6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21613166 - 21613298
Alignment:
| Q |
1 |
gacaactacctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21613166 |
gacaactacctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggcgtagatgaagaatctcttctcagaggact |
21613265 |
T |
|
| Q |
101 |
tccattggatcttcgaagagacattaaacgcca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21613266 |
tccattggatcttcgaagagacattaaacgcca |
21613298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 40511296 - 40511206
Alignment:
| Q |
43 |
atcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggacttccattggatcttcgaagagacattaaacgcca |
133 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| |||||| ||| |||| ||||||||| |||||||| | ||||| || |||||||| |
|
|
| T |
40511296 |
atcaatataaatgggtggctacacgaggagtagaagaagaagatctgctcaaaggacttccgctggatcttaggagagaaatcaaacgcca |
40511206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University