View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5806-7 (Length: 129)
Name: Solexa-NF5806-7
Description: NF5806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5806-7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 8e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 8e-65
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43223474 - 43223602
Alignment:
| Q |
1 |
cgcaattttttacaatcacaattcacaaggatcacaatgtttgtagtttctgcaattcaatggcattcttggtttgaagaccacgcacctttttaacttt |
100 |
Q |
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| T |
43223474 |
cgcaattttttacaatcacaattcacaaggatcacaatgtttgtagtttctgcaattcaatggcattcttggtttgaagaccacacacctttttaacttt |
43223573 |
T |
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| Q |
101 |
attatctgtttttattttctctacacaag |
129 |
Q |
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| T |
43223574 |
attatctgtttttattttctctacacaag |
43223602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 41657129 - 41657001
Alignment:
| Q |
1 |
cgcaattttttacaatcacaattcacaaggatcacaatgtttgtagtttctgcaattcaatggcattcttggtttgaagaccacgcacctttttaacttt |
100 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| || |||||| |||||||| |
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| T |
41657129 |
cgcaatttttaacaatcacaattcacaaggatcgcaatgtttgtagtttctgcaattcaatgacatgcttggtttgaagacaacacaccttcttaacttt |
41657030 |
T |
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| Q |
101 |
attatctgtttttattttctctacacaag |
129 |
Q |
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| T |
41657029 |
attatctgtttttattttctctacacaag |
41657001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 43227095 - 43227154
Alignment:
| Q |
17 |
cacaattcacaaggatcacaatgtttgtagtttctgcaattcaatggcattcttggtttgaa |
78 |
Q |
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| T |
43227095 |
cacaattcacaaggatcataatgtttgtagtttcagcactttaatg--atgcttggtttgaa |
43227154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 41651097 - 41651064
Alignment:
| Q |
17 |
cacaattcacaaggatcacaatgtttgtagtttc |
50 |
Q |
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| T |
41651097 |
cacaattcacaaggatcataatgtttgtagtttc |
41651064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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