View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5808-1 (Length: 243)

Name: Solexa-NF5808-1
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5808-1
Solexa-NF5808-1
[»] chr3 (2 HSPs)
chr3 (8-243)||(16859355-16859590)
chr3 (162-243)||(36100162-36100240)
[»] chr7 (2 HSPs)
chr7 (8-243)||(46742110-46742345)
chr7 (8-42)||(46372679-46372713)
[»] chr4 (2 HSPs)
chr4 (8-243)||(14198976-14199209)
chr4 (8-42)||(36040247-36040281)
[»] chr1 (6 HSPs)
chr1 (11-73)||(30217215-30217277)
chr1 (8-42)||(11166430-11166464)
chr1 (8-42)||(4296767-4296801)
chr1 (8-42)||(37382116-37382150)
chr1 (8-42)||(41768344-41768378)
chr1 (8-42)||(50986105-50986139)
[»] chr8 (2 HSPs)
chr8 (8-42)||(37742525-37742559)
chr8 (8-42)||(44842865-44842899)
[»] chr6 (1 HSPs)
chr6 (8-42)||(27830976-27831010)
[»] chr5 (1 HSPs)
chr5 (8-42)||(20407182-20407216)
[»] chr2 (1 HSPs)
chr2 (8-42)||(13098790-13098824)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 16859590 - 16859355
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16859590 gatataattgtaaaattgtgttaggactgtttttggatatgtattctttcttttacttctcatctttatacattttcttgttttgcctcatatgtgatgt 16859491  T
Q  108 tgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859490 tgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatggt 16859391  T
Q  208 tttgtaaagatgaaaagaaattattttacctgtctg 243  Q
    ||||||||||||||||||||||||||||||||||||    
T  16859390 tttgtaaagatgaaaagaaattattttacctgtctg 16859355  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 36100162 - 36100240
Alignment:
Q  162 gataaaaaattaaagaaataatgagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctg 243  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100162 gataaaaaattaaagaaat---gagtttaatgatcattttcatggttttgtaaagatgaaaagaaattattttacctgtctg 36100240  T

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Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 46742110 - 46742345
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742110 gatataattgtaaaattgtgttaggactgtttttggatatgtattatttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatgt 46742209  T
Q  108 tgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatggt 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46742210 tgaagattctgtagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatgat 46742309  T
Q  208 tttgtaaagatgaaaagaaattattttacctgtctg 243  Q
    ||||||||||||||||||||||||||||||||||||    
T  46742310 tttgtaaagatgaaaagaaattattttacctgtctg 46742345  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 46372679 - 46372713
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  46372679 gatataattataaaattgtgttaggactgtttttg 46372713  T

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Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 14199209 - 14198976
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctttatacattttcttgttttgcctcatatgtgatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14199209 gatataattgtaaaattgtgttaggactgtttttggatatgtattctttcttttacttctcatctttatacattttcttgttttgcctcatatgtgatgt 14199110  T
Q  108 tgaagattctatagtttgttaaatatgtcatatgaagctcaacaataaaatgaagataaaaaattaaagaaataatgagtttaatgatcattttcatggt 207  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14199109 tgaagattctatagtttgttaa--atgtcatatgaagctcaacaataaaatgaagatgaaaaattaaagaaataatgagtttaatgatcattttcatggt 14199012  T
Q  208 tttgtaaagatgaaaagaaattattttacctgtctg 243  Q
    ||||||||||||||||||||||||||||||||||||    
T  14199011 tttgtaaagatgaaaagaaattattttacctgtctg 14198976  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 36040247 - 36040281
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  36040247 gatataattttaaaattgtgttaggactgtttttg 36040281  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 30217277 - 30217215
Alignment:
Q  11 ataattgtaaaattgtgttaggactgtttttggatatgtattctttctttaacttctcatctt 73  Q
    |||||||||||||| |||||||||||| |||||||||||||| | ||| ||||| ||||||||    
T  30217277 ataattgtaaaattatgttaggactgtgtttggatatgtattttctctctaactactcatctt 30217215  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 11166430 - 11166464
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    |||||||||||||||||||||||||||||||||||    
T  11166430 gatataattgtaaaattgtgttaggactgtttttg 11166464  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 4296767 - 4296801
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  4296767 gatataattttaaaattgtgttaggactgtttttg 4296801  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 37382150 - 37382116
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  37382150 gatataattttaaaattgtgttaggactgtttttg 37382116  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 41768378 - 41768344
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  41768378 gatataattttaaaattgtgttaggactgtttttg 41768344  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 50986139 - 50986105
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  50986139 gatataattttaaaattgtgttaggactgtttttg 50986105  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 37742559 - 37742525
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    |||||||||||||||||||||||||||||||||||    
T  37742559 gatataattgtaaaattgtgttaggactgtttttg 37742525  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 44842865 - 44842899
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  44842865 gatataattttaaaattgtgttaggactgtttttg 44842899  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27830976 - 27831010
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  27830976 gatataattttaaaattgtgttaggactgtttttg 27831010  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 20407182 - 20407216
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  20407182 gatataattttaaaattgtgttaggactgtttttg 20407216  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 13098824 - 13098790
Alignment:
Q  8 gatataattgtaaaattgtgttaggactgtttttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  13098824 gatataattttaaaattgtgttaggactgtttttg 13098790  T

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