View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5808-10 (Length: 140)
Name: Solexa-NF5808-10
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-10 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 16841966 - 16842099
Alignment:
| Q |
7 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
16841966 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcaatcaccgagatgattatcataaatc |
16842065 |
T |
|
| Q |
107 |
aattaacttggatgaatcacagttttaatgtaac |
140 |
Q |
| |
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||||||||||||| | |||||||||||||||||| |
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| T |
16842066 |
aattaacttggatcagtcacagttttaatgtaac |
16842099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 22481659 - 22481770
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
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|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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| T |
22481659 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
22481758 |
T |
|
| Q |
105 |
tcaattaacttg |
116 |
Q |
| |
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|||| ||||||| |
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|
| T |
22481759 |
tcaactaacttg |
22481770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 6539 - 6422
Alignment:
| Q |
7 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
106 |
Q |
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|||||||||||||||||| ||| | |||| || || |||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||| |
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| T |
6539 |
caatacacaactttattagaaggagtgttgaaatggatgttgatttcaatctttatgaagatgaaaatacaatcattcaccatgatgattatcatagatc |
6440 |
T |
|
| Q |
107 |
aattaacttggatgaatc |
124 |
Q |
| |
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|| |||||||||| |||| |
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|
| T |
6439 |
aactaacttggatcaatc |
6422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 5916884 - 5916749
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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| T |
5916884 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
5916785 |
T |
|
| Q |
105 |
tcaattaacttggatgaat--cacagttttaatgta |
138 |
Q |
| |
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|||| ||||||| || ||| || |||||||||||| |
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|
| T |
5916784 |
tcaactaacttgaatcaatcccaaagttttaatgta |
5916749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 36311741 - 36311876
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
36311741 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
36311840 |
T |
|
| Q |
105 |
tcaattaacttggatgaat--cacagttttaatgta |
138 |
Q |
| |
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|||| ||||||| || ||| || |||||||||||| |
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|
| T |
36311841 |
tcaactaacttgaatcaatcccaaagttttaatgta |
36311876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 16547600 - 16547711
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
16547600 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
16547699 |
T |
|
| Q |
105 |
tcaattaacttg |
116 |
Q |
| |
|
|||| ||||||| |
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|
| T |
16547700 |
tcaactaacttg |
16547711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 17830706 - 17830573
Alignment:
| Q |
7 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
106 |
Q |
| |
|
|||||||||||||||||| ||| | || | || || |||||||||| | | ||||| |||||||||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
17830706 |
caatacacaactttattagaaggagtgctgaaatggatgttgatttcagtctttatgaagatgaaaatacaatcattcaccatgatgattatcatagatc |
17830607 |
T |
|
| Q |
107 |
aattaacttggatgaat--cacagttttaatgta |
138 |
Q |
| |
|
|| |||||||||| ||| || |||||||||||| |
|
|
| T |
17830606 |
aactaacttggatcaatcccaaagttttaatgta |
17830573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 16565683 - 16565794
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
16565683 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
16565782 |
T |
|
| Q |
105 |
tcaattaacttg |
116 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
16565783 |
tcaactaacttg |
16565794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 15618988 - 15619123
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatga-aaatacagtcattcaccgtgatgattatcataa |
103 |
Q |
| |
|
|||||||||||||||||| | ||| | || | || || |||||||||| ||| ||||| ||||| | | ||||| ||||||||| |||| ||||||||| |
|
|
| T |
15618988 |
ggcaatacacaactttatgagaaggattggtgaaatggatgttgatttcaatctttatgaagattagatatacaatcattcaccatgat-attatcatag |
15619086 |
T |
|
| Q |
104 |
atcaattaacttggatgaat--cacagttttaatgta |
138 |
Q |
| |
|
||||| |||||| ||| ||| || |||||||||||| |
|
|
| T |
15619087 |
atcaactaactttgatcaatcccaaagttttaatgta |
15619123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 10372655 - 10372536
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||| ||| ||||| || ||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
10372655 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgatttcaatctttatgaaaatgaaaatacaatcattcaccatgatgattatcataga |
10372556 |
T |
|
| Q |
105 |
tcaattaacttggatgaatc |
124 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
10372555 |
tcaactaacttggatcaatc |
10372536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 37638847 - 37638963
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
37638847 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcac---aatgatgatcataga |
37638943 |
T |
|
| Q |
105 |
tcaattaacttggatgaatc |
124 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
37638944 |
tcaactaacttggatcaatc |
37638963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 35569846 - 35569735
Alignment:
| Q |
5 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
104 |
Q |
| |
|
|||||||||||||||||||| || | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
35569846 |
ggcaatacacaactttattagaaagagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
35569747 |
T |
|
| Q |
105 |
tcaattaacttg |
116 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
35569746 |
tcaactaacttg |
35569735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 9553403 - 9553346
Alignment:
| Q |
58 |
tttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatcaattaactt |
115 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
9553403 |
tttatgaagatgaaattacactcattcaccacgatgattatcatagatcaactaactt |
9553346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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