View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-11 (Length: 139)
Name: Solexa-NF5808-11
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-11 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 9e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28921930 - 28921793
Alignment:
| Q |
1 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagtattgatattcctatttggtactgttcgggtgttcgaggctgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28921930 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagtggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtg |
28921831 |
T |
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| Q |
101 |
gaacaagagggccttttccaatgactgtactcaaacac |
138 |
Q |
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| T |
28921830 |
gaacaagagggccttttccaatgactgtactcaaacac |
28921793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28912434 - 28912297
Alignment:
| Q |
1 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagtattgatattcctatttggtactgttcgggtgttcgaggctgtg |
100 |
Q |
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|||||||||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28912434 |
gatgaagaggatgtgaatagtaaagtcacttcatctggaagaaagggagcggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtg |
28912335 |
T |
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| Q |
101 |
gaacaagagggccttttccaatgactgtactcaaacac |
138 |
Q |
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| T |
28912334 |
gaacaagagggccttttccaatgactgtactcaaacac |
28912297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 28897929 - 28897793
Alignment:
| Q |
1 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagtattgatattcctatttggtactgttcgggtgttcgaggctgtg |
100 |
Q |
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| T |
28897929 |
gatgaagaggatgtgaatattaaaataacttcatcggaaagaaagggagtggagagtcctgatattcctatttggcactgttcgggtatttgtggtagtg |
28897830 |
T |
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| Q |
101 |
gaacaagagggccttttccaatgactgtactcaaaca |
137 |
Q |
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| T |
28897829 |
gaacaagagggccttttccaatgtctatactcaaaca |
28897793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 28930998 - 28930863
Alignment:
| Q |
1 |
gatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagtattgatattcctatttggtactgttcgggtgttcgaggctgtg |
100 |
Q |
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|||||||||||||| | |||| |||| |||||| | | ||||||||||| || |||| |||| || | |||||| | ||||||||| ||||||| ||| |
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| T |
28930998 |
gatgaagaggatgttaatattaaagtcacttcagcagaaagaaagggagtggtgagttctgatgtttccatttggcattgttcgggtattcgaggtggtg |
28930899 |
T |
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| Q |
101 |
gaacaagagggccttttccaatgactgtactcaaac |
136 |
Q |
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|||||| |||||||||| ||||| |||||||||||| |
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| T |
28930898 |
gaacaaaagggcctttttcaatgtctgtactcaaac |
28930863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 28888227 - 28888128
Alignment:
| Q |
39 |
aagaaagggagaggagagtattgatattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacac |
138 |
Q |
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||||||||||| ||||| | ||||||| | |||||||| ||||| ||| |||| || ||| ||||| |||||||||||||||| |||||||||||||| |
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| T |
28888227 |
aagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactcaaacac |
28888128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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