View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-14 (Length: 136)
Name: Solexa-NF5808-14
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 6e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 3428220 - 3428355
Alignment:
| Q |
1 |
agagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaataaaagaa |
100 |
Q |
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| T |
3428220 |
agagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaataaaagaa |
3428319 |
T |
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| Q |
101 |
taaaagttgatttataacaacaattctttgagaatt |
136 |
Q |
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| T |
3428320 |
taaaagttgatttataacaataattctttgagaatt |
3428355 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 3431035 - 3431137
Alignment:
| Q |
33 |
ctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataacaacaattctttgag |
132 |
Q |
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||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
3431035 |
ctcaacgagacaagatgatgtaatgagacaatcgcattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataataataattctttgag |
3431134 |
T |
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| Q |
133 |
aat |
135 |
Q |
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||| |
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| T |
3431135 |
aat |
3431137 |
T |
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