View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-19 (Length: 130)
Name: Solexa-NF5808-19
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 48020803 - 48020881
Alignment:
| Q |
52 |
tttgttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgccaatataatcatgtccatt |
130 |
Q |
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| T |
48020803 |
tttgttcttacaagggtcaaatggtcaattgttggaacaccaaacgtagaatattgatgccaatataatcatgtccatt |
48020881 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 48020758 - 48020791
Alignment:
| Q |
24 |
tccttaatccttaataatcctatgttgttttgtt |
57 |
Q |
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| T |
48020758 |
tccttaatccttaataatcctatgttgttttgtt |
48020791 |
T |
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