View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5808-22 (Length: 127)
Name: Solexa-NF5808-22
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-22 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 75; Significance: 6e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 28921517 - 28921603
Alignment:
| Q |
41 |
cttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaagaaataagaacatgtaagagattcacatgag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28921517 |
cttcaaaaacatcactgagttgagtctctcctgagattgtatgacaatgagtggaagaaataagaacatgttagagattcacatgag |
28921603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 28911906 - 28911995
Alignment:
| Q |
39 |
aacttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaag-aaataagaacatgtaagagattcacatgag |
127 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| | |||||||||||| || | | |||||| ||||||| ||||||| ||||||| |
|
|
| T |
28911906 |
aacttcaaaaacatcactgagttgagtttgtgctcaaactgtatgacaaggtgtacaggaaaataaaaacatgttagagattgacatgag |
28911995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 28921384 - 28921417
Alignment:
| Q |
7 |
atggttgaaacctgatcataattttatgagataa |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28921384 |
atggttgaaacctgatcataattttatgagataa |
28921417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 28897403 - 28897483
Alignment:
| Q |
39 |
aacttcaaaaacatcactgagttgagtctctcctcagattgtatgacaaggagtggaag-aaataagaacatgtaagagat |
118 |
Q |
| |
|
||||||||||||||||||| |||||| | | |||| ||||||||||||||||| ||| |||||| ||||||| |||||| |
|
|
| T |
28897403 |
aacttcaaaaacatcactggattgagtttgtgctcaaattgtatgacaaggagtacaagaaaataaaaacatgtcagagat |
28897483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University