View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-23 (Length: 127)
Name: Solexa-NF5808-23
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 8e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 37626489 - 37626608
Alignment:
| Q |
8 |
aaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggt |
107 |
Q |
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| T |
37626489 |
aaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggt |
37626588 |
T |
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| Q |
108 |
gactttatgctcaagattac |
127 |
Q |
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|||||||||||||||||||| |
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| T |
37626589 |
gactttatgctcaagattac |
37626608 |
T |
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Target: chr2; HSP #2
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 37618107 - 37618226
Alignment:
| Q |
8 |
aaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
37618107 |
aaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattagcagaaatatgcaggt |
37618206 |
T |
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| Q |
108 |
gactttatgctcaagattac |
127 |
Q |
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|||||||||||||||||||| |
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| T |
37618207 |
gactttatgctcaagattac |
37618226 |
T |
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