View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-24 (Length: 127)
Name: Solexa-NF5808-24
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 16842297 - 16842175
Alignment:
| Q |
5 |
acataattaatcccaatgcattgtaaatttctaaattagcataataaaacatcaaggctctaaacttaattacaaattgataatataatgtaaagtgtaa |
104 |
Q |
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| T |
16842297 |
acataattaatcccaatgcattgtaaatttctaaattagcataataaaacgtcaaggctctaaacttaattacaaattgataatataatgtaaagtgtaa |
16842198 |
T |
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| Q |
105 |
tataatatgaaaatgttattaca |
127 |
Q |
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| T |
16842197 |
tataatattaaaatgtttttaca |
16842175 |
T |
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