View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-25 (Length: 126)
Name: Solexa-NF5808-25
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-25 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-56
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 18046666 - 18046787
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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| T |
18046666 |
atcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcgagatgttactatagacgattgtggt |
18046765 |
T |
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| Q |
105 |
ggaacaagtacctgtaaaatgc |
126 |
Q |
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| T |
18046766 |
ggaataagtacctgtaaaatgc |
18046787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-47
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 18034487 - 18034366
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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| T |
18034487 |
atcaaatgatattagatgtgtagaagatattggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtgat |
18034388 |
T |
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| Q |
105 |
ggaacaagtacctgtaaaatgc |
126 |
Q |
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| T |
18034387 |
ggaataagcacctgtaaaatgc |
18034366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-56
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 4398660 - 4398539
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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| T |
4398660 |
atcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcgagatgttactatagacgattgtggt |
4398561 |
T |
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| Q |
105 |
ggaacaagtacctgtaaaatgc |
126 |
Q |
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| T |
4398560 |
ggaataagtacctgtaaaatgc |
4398539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-51
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 4497982 - 4498103
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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| T |
4497982 |
atcaaatgatattagatgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgtttctatagacgattgtggt |
4498081 |
T |
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| Q |
105 |
ggaacaagtacctgtaaaatgc |
126 |
Q |
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|||| ||||||||||||||||| |
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| T |
4498082 |
ggaataagtacctgtaaaatgc |
4498103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-47
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 4519042 - 4519163
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4519042 |
atcaaatgatattagatgtgtagaagatattggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtgat |
4519141 |
T |
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| Q |
105 |
ggaacaagtacctgtaaaatgc |
126 |
Q |
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| T |
4519142 |
ggaataagcacctgtaaaatgc |
4519163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-34
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 4529233 - 4529333
Alignment:
| Q |
5 |
atcaaatgaygttagacgygtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttactatagacgattgtggt |
104 |
Q |
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||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | ||| |||||||||||||| |
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| T |
4529233 |
atcaaatgatgttagacgtgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttcttccaagatatcactgtagacgattgtggt |
4529332 |
T |
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| Q |
105 |
g |
105 |
Q |
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| T |
4529333 |
g |
4529333 |
T |
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