View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-26 (Length: 125)
Name: Solexa-NF5808-26
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-26 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-53
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 18046894 - 18046780
Alignment:
| Q |
11 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcata |
110 |
Q |
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| T |
18046894 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaaccacgacatattcatccccggtcactacttgcgctagataatgcata |
18046795 |
T |
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| Q |
111 |
atgtcatgcatttta |
125 |
Q |
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| T |
18046794 |
atgtcatgcatttta |
18046780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 18034259 - 18034373
Alignment:
| Q |
11 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcata |
110 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||| || |||| |
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| T |
18034259 |
acgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattctcggtcactagttgcgctagatcatacata |
18034358 |
T |
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| Q |
111 |
atgtcatgcatttta |
125 |
Q |
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| T |
18034359 |
atgtcatgcatttta |
18034373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-53
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 4398432 - 4398546
Alignment:
| Q |
11 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcata |
110 |
Q |
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| T |
4398432 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttcaaccacgacatattcatccccggtcactacttgcgctagataatgcata |
4398531 |
T |
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| Q |
111 |
atgtcatgcatttta |
125 |
Q |
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| T |
4398532 |
atgtcatgcatttta |
4398546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-41
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 4498210 - 4498096
Alignment:
| Q |
11 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcata |
110 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
4498210 |
acgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattcccggtcactagttgcgctagatcatgcata |
4498111 |
T |
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| Q |
111 |
atgtcatgcatttta |
125 |
Q |
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| T |
4498110 |
atgtcatgcatttta |
4498096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 4519270 - 4519156
Alignment:
| Q |
11 |
acgagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcata |
110 |
Q |
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|||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||| || |||| |
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| T |
4519270 |
acgagatgacaaataacgtgttctgtttcctatgtttagttcttctccttcaaccacgacatattcattctcggtcactagttgcgctagatcatacata |
4519171 |
T |
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| Q |
111 |
atgtcatgcatttta |
125 |
Q |
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||||||||||||||| |
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| T |
4519170 |
atgtcatgcatttta |
4519156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 4529459 - 4529347
Alignment:
| Q |
13 |
gagatgacaaataacgtgttttgttttcaatgtttagttcttctccttyaaccacgacatattcatccccggtcactttttgcgctagataatgcataat |
112 |
Q |
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||||||| ||| |||||||||||||| |||||||| ||||||||||| | ||| ||||||||||| |||| || | || ||||||| |||||||| |
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| T |
4529459 |
gagatgataaaaaacgtgttttgtttccaatgtttgcttcttctccttcagccatgacatattcattcccgaccattagctgtgctagatcatgcataag |
4529360 |
T |
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| Q |
113 |
gtcatgcatttta |
125 |
Q |
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||||||||||||| |
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| T |
4529359 |
gtcatgcatttta |
4529347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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