View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-28 (Length: 125)
Name: Solexa-NF5808-28
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 48021264 - 48021148
Alignment:
| Q |
8 |
ctcttttcctctcggaactctcaaacaaagctttagaatatgcgagttgctactagactcattaagcnnnnnnnntacaataccaatttttaatttccgc |
107 |
Q |
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| T |
48021264 |
ctcttttcctctcggaactctcaaacaaagttttagaatatgcgagttgctactagactcattaagc-taaaaaatacaataccaatttttaatttccgc |
48021166 |
T |
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| Q |
108 |
agtttaacgaacaagatt |
125 |
Q |
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| T |
48021165 |
aatttaacgaacaagatt |
48021148 |
T |
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