View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5808-3 (Length: 206)

Name: Solexa-NF5808-3
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5808-3
Solexa-NF5808-3
[»] chr5 (12 HSPs)
chr5 (1-204)||(16668628-16668830)
chr5 (1-192)||(8948931-8949120)
chr5 (97-192)||(18465485-18465580)
chr5 (118-204)||(13362799-13362885)
chr5 (118-204)||(28070103-28070189)
chr5 (118-203)||(23335657-23335742)
chr5 (118-205)||(2827017-2827104)
chr5 (130-204)||(25017179-25017253)
chr5 (137-205)||(34329155-34329223)
chr5 (141-204)||(33868185-33868248)
chr5 (163-204)||(42512228-42512269)
chr5 (168-204)||(37456710-37456746)
[»] chr6 (9 HSPs)
chr6 (1-204)||(29157255-29157456)
chr6 (1-205)||(18611217-18611420)
chr6 (118-203)||(24737641-24737726)
chr6 (134-204)||(34399670-34399740)
chr6 (118-204)||(33346321-33346407)
chr6 (97-204)||(15034900-15035011)
chr6 (118-192)||(877249-877323)
chr6 (158-204)||(35119264-35119310)
chr6 (168-204)||(7089112-7089148)
[»] chr2 (13 HSPs)
chr2 (1-191)||(4281622-4281811)
chr2 (1-192)||(25995328-25995511)
chr2 (118-204)||(18298061-18298147)
chr2 (118-204)||(20709803-20709889)
chr2 (118-204)||(25192921-25193007)
chr2 (137-192)||(14551288-14551343)
chr2 (137-204)||(4579787-4579854)
chr2 (114-175)||(43822412-43822473)
chr2 (141-204)||(5098746-5098809)
chr2 (143-204)||(36636912-36636973)
chr2 (2-31)||(43822525-43822554)
chr2 (168-204)||(1292179-1292215)
chr2 (168-204)||(9143615-9143651)
[»] chr1 (14 HSPs)
chr1 (1-204)||(16115880-16116083)
chr1 (84-204)||(35198097-35198217)
chr1 (97-204)||(37639371-37639478)
chr1 (118-204)||(18056813-18056899)
chr1 (118-204)||(22348068-22348154)
chr1 (118-192)||(23320035-23320109)
chr1 (118-192)||(179649-179723)
chr1 (118-192)||(30802437-30802511)
chr1 (118-204)||(45889625-45889711)
chr1 (1-67)||(35198002-35198068)
chr1 (118-192)||(8402261-8402335)
chr1 (168-204)||(11421624-11421660)
chr1 (168-204)||(34369690-34369726)
chr1 (141-205)||(51420374-51420437)
[»] chr4 (14 HSPs)
chr4 (1-161)||(48077699-48077857)
chr4 (97-203)||(50563658-50563764)
chr4 (118-204)||(4168387-4168473)
chr4 (118-204)||(27764269-27764355)
chr4 (118-205)||(637882-637969)
chr4 (118-204)||(22181195-22181281)
chr4 (118-204)||(26447362-26447448)
chr4 (118-204)||(36621651-36621737)
chr4 (118-204)||(45256004-45256090)
chr4 (118-204)||(38485624-38485710)
chr4 (118-192)||(51837041-51837115)
chr4 (118-204)||(21097169-21097255)
chr4 (143-192)||(6386516-6386565)
chr4 (157-205)||(1729604-1729652)
[»] chr8 (13 HSPs)
chr8 (1-204)||(15181820-15182028)
chr8 (118-204)||(32987395-32987481)
chr8 (118-204)||(39022004-39022090)
chr8 (118-204)||(4836651-4836737)
chr8 (118-204)||(4842096-4842182)
chr8 (118-204)||(7058143-7058229)
chr8 (118-204)||(7614097-7614183)
chr8 (118-204)||(8550533-8550619)
chr8 (118-204)||(15260801-15260887)
chr8 (137-204)||(1208738-1208805)
chr8 (118-157)||(2750101-2750140)
chr8 (145-186)||(1671850-1671891)
chr8 (168-204)||(41451135-41451171)
[»] chr7 (16 HSPs)
chr7 (97-204)||(5757416-5757523)
chr7 (97-205)||(32090606-32090714)
chr7 (118-204)||(46573450-46573536)
chr7 (118-204)||(30428902-30428988)
chr7 (1-72)||(32090759-32090830)
chr7 (118-198)||(33797966-33798046)
chr7 (118-204)||(46024056-46024142)
chr7 (118-204)||(15974886-15974972)
chr7 (137-204)||(28396751-28396818)
chr7 (137-204)||(48690924-48690991)
chr7 (137-192)||(48691033-48691088)
chr7 (134-205)||(12279773-12279844)
chr7 (142-204)||(48305265-48305327)
chr7 (143-204)||(44141226-44141287)
chr7 (134-204)||(12279670-12279740)
chr7 (40-73)||(5757566-5757599)
[»] chr3 (18 HSPs)
chr3 (118-204)||(50754035-50754121)
chr3 (118-204)||(52987600-52987686)
chr3 (97-192)||(23699369-23699464)
chr3 (97-192)||(23717824-23717919)
chr3 (97-192)||(23736280-23736375)
chr3 (118-204)||(51362388-51362474)
chr3 (1-73)||(23755458-23755530)
chr3 (118-205)||(16277364-16277451)
chr3 (2-73)||(23699507-23699578)
chr3 (2-73)||(23717962-23718033)
chr3 (2-73)||(23736418-23736489)
chr3 (118-204)||(8718130-8718216)
chr3 (118-204)||(9070017-9070103)
chr3 (118-204)||(19385265-19385351)
chr3 (118-204)||(39099226-39099312)
chr3 (118-204)||(7045250-7045336)
chr3 (97-161)||(23755351-23755415)
chr3 (134-192)||(17627197-17627255)
[»] scaffold0097 (1 HSPs)
scaffold0097 (118-204)||(13642-13728)
[»] scaffold0238 (1 HSPs)
scaffold0238 (118-204)||(25182-25268)
[»] scaffold0194 (1 HSPs)
scaffold0194 (118-204)||(27636-27722)
[»] scaffold0337 (1 HSPs)
scaffold0337 (134-205)||(7045-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (135-204)||(10642-10711)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 16668628 - 16668830
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||    
T  16668628 gagaagaagatataaggtggcgctggtctgaatgtcctagagagagaagtgagcaaagcatttttagtgagag-gttttttttgtcaaaatgaagatata 16668726  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||    
T  16668727 cctctttcctttattctttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgc 16668826  T
Q  201 ataa 204  Q
    ||||    
T  16668827 ataa 16668830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8949120 - 8948931
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||    
T  8949120 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagaggtttttttttgtcaaaatgaagatata 8949021  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||||||  || |||||||||||||    
T  8949020 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatg 8948931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 18465485 - 18465580
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18465485 tatacctctttcctttattccttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatg 18465580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 13362885 - 13362799
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||    
T  13362885 ttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatggttgtgaagtgtttatgcacggtgcataa 13362799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 28070103 - 28070189
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||    
T  28070103 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgcacggtgcataa 28070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 23335657 - 23335742
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcata 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  23335657 ttgatttggtgtagtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaaatgtttatgcacggtgcata 23335742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 2827017 - 2827104
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||| ||||||||||| |||||| |||||    
T  2827017 ttgatttggtgtagtttgagaagcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtggataaa 2827104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 25017179 - 25017253
Alignment:
Q  130 agtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  25017179 agtttgagaaacctaaaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 25017253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 34329223 - 34329155
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    |||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaa 34329155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 33868248 - 33868185
Alignment:
Q  141 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||| |||| | || ||| |||| |||||||||||||||| | |||||||||    
T  33868248 cctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataa 33868185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 42512269 - 42512228
Alignment:
Q  163 actagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| |||||||||||||||| |||||| ||||    
T  42512269 actagatctgatggttgtgaagtgtttatgcacggtggataa 42512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 37456746 - 37456710
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37456746 atctgatggttgtgatgtgtttatgtacggtgcataa 37456710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29157456 - 29157255
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||         |||||||| ||||||||    
T  29157456 gagaagaagatataaggtggcgctggtttgaatgtcctggatagagaagtgagcaaagcatttttagtgagagattttttt--gtcaaaatgaagatata 29157359  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||    
T  29157358 cctctttcctttattccttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgc 29157259  T
Q  201 ataa 204  Q
    ||||    
T  29157258 ataa 29157255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 18611420 - 18611217
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||          |||||||| ||||||||    
T  18611420 gagaagaagatataaggtggcgctggtttaaatgtcctagagagagaagtgagcaaagcatttttaatgagag-gttttttttgtcaaaatgaagatata 18611322  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgc 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |  ||||    
T  18611321 cctctttcctttattccttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagagtgc 18611222  T
Q  201 ataaa 205  Q
    |||||    
T  18611221 ataaa 18611217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 24737641 - 24737726
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcata 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  24737641 ttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata 24737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34399740 - 34399670
Alignment:
Q  134 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataa 34399670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 33346321 - 33346407
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||  |||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  33346321 ttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataa 33346407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 15034900 - 15035011
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgaga-----agcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttat 191  Q
    |||||||||||| |||||||||||||||||||||||||||||     |||||| ||||||||||| |||| ||||||||||||| |||||||   |||||    
T  15034900 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttat 15034998  T
Q  192 gtacggtgcataa 204  Q
    | |||||||||||    
T  15034999 gcacggtgcataa 15035011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 877323 - 877249
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||  ||||| ||| ||||||||||||||||    
T  877323 ttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatggttgtgaagtgtttatg 877249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 35119310 - 35119264
Alignment:
Q  158 tgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||| ||||||||||||| |||||||||||||||| |||||||||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 35119264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 7089148 - 7089112
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  7089148 atctgatgattgtgatgtgtttatgcacggtgcataa 7089112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4281622 - 4281811
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||    
T  4281622 gagaagaagatataaggtgacgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag-gttttttttgtcaaaatgaagatata 4281720  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttat 191  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4281721 cctctttcctttattccttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 25995511 - 25995328
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag--annnnnnnnngtcaaaataaagata 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||             
T  25995511 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgaacaaagcatttttagtgagaggtttttttttttgtcaaa--------- 25995421  T
Q  99 tacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
     |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||    
T  25995420 -acctatttcctttattccttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatg 25995328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 18298061 - 18298147
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  18298061 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 18298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 20709889 - 20709803
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| ||||    
T  20709889 ttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtggataa 20709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 25193007 - 25192921
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||||||    
T  25193007 ttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcataa 25192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 14551288 - 14551343
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttatg 14551343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 4579787 - 4579854
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||| || |||||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataa 4579854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 43822473 - 43822412
Alignment:
Q  114 ttccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatg 175  Q
    ||||||||||| ||||| ||| |||| ||||||||||| ||||||||| |||||||||||||    
T  43822473 ttccttgattttgtgtaatttaagaaacctaggattatcacacgtgtacactagatctgatg 43822412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 5098809 - 5098746
Alignment:
Q  141 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||| | || || ||||| |||||||||||||||| | |||||||||    
T  5098809 cctaggattattacacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataa 5098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 36636912 - 36636973
Alignment:
Q  143 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||| |  | |||||||| |||||||||||||||||| ||| |||||    
T  36636912 taggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataa 36636973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 43822554 - 43822525
Alignment:
Q  2 agaagaagatataaggtggcgctggtttga 31  Q
    ||||||||||||||||||||||||||||||    
T  43822554 agaagaagatataaggtggcgctggtttga 43822525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 1292179 - 1292215
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||| |||||||||||||||||||||    
T  1292179 atctgatggttgtgatgtgtttatgtacggtgcataa 1292215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9143651 - 9143615
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  9143651 atctgatgattgtgatgtgtttatgcacggtgcataa 9143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16116083 - 16115880
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||| |||||| ||||||||          || ||||| ||||||||    
T  16116083 gagaagaagatataaggtcgcgttggtttgaatgtcctagagagagaagtgacgaaaacattttcagtgagaggtttttttttgtaaaaatgaagatata 16115984  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgc 200  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| | ||||| ||||| |||||||||||||||| |||||||    
T  16115983 cctctttcctttattccttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgc 16115884  T
Q  201 ataa 204  Q
    ||||    
T  16115883 ataa 16115880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 35198097 - 35198217
Alignment:
Q  84 gtcaaaataaagatatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaa 183  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||  ||||||    
T  35198097 gtcaaaatgaagatatacctctttcctttatttcttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaa 35198196  T
Q  184 gtgtttatgtacggtgcataa 204  Q
    ||||||||| | |||||||||    
T  35198197 gtgtttatgcagggtgcataa 35198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 37639478 - 37639371
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||| |||||||||||||||| | |    
T  37639478 tatacctctttcctttattccttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagg 37639379  T
Q  197 gtgcataa 204  Q
    ||||||||    
T  37639378 gtgcataa 37639371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 18056899 - 18056813
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  18056899 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 18056813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 22348154 - 22348068
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||  ||||||||||    
T  22348154 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcgcggtgcataa 22348068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 23320035 - 23320109
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  23320035 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatg 23320109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 179723 - 179649
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  179723 ttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgtttatg 179649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 30802511 - 30802437
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  30802511 ttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 45889711 - 45889625
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || |||||||| |||||| ||||    
T  45889711 ttgatttggtgtagtttgagaagcctaagattattacacatgtatactagatctgatggttgtaaaatgtttatgcacggtggataa 45889625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35198002 - 35198068
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttag 67  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  35198002 gagaagaagatataaggtggcgctggtttgaatgtcctaaatagagaagtgagcaaagtatttttag 35198068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 8402261 - 8402335
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||||||    
T  8402261 ttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttatg 8402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 11421660 - 11421624
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||||||||||||| |||||||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataa 11421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 34369726 - 34369690
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||||||||||||| |||||||||||    
T  34369726 atctgatggttgtgaagtgtttatgcacggtgcataa 34369690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 51420437 - 51420374
Alignment:
Q  141 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    |||||||||||||| |||||||| || |||||||| ||||||| |||||||| | | ||||||||    
T  51420437 cctaggattattactcgtgtataataaatctgatggttgtgaa-tgtttatgcaggatgcataaa 51420374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 48077699 - 48077857
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatata 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||          |||||||| ||||||||    
T  48077699 gagaagaagatataaggtggtgctggtttgaatgtcctagagagagaagtgagcaaagcatttttaatgagag--gtttttttgtcaaaatgaagatata 48077796  T
Q  101 cctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgta 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  48077797 cctctttcctttattccttaatttggtgtagtttgagaagcctaggattattacacatgta 48077857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 50563658 - 50563764
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||||| | |    
T  50563658 tatacctctttcctttattccttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagg 50563757  T
Q  197 gtgcata 203  Q
    |||||||    
T  50563758 gtgcata 50563764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 4168473 - 4168387
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4168473 ttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4168387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 27764355 - 27764269
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||    
T  27764355 ttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatggttgcgaagtgtttatgcacggtgcataa 27764269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 637969 - 637882
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    |||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  637969 ttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaa 637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 22181195 - 22181281
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||| |||||| |||||||||||    
T  22181195 ttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatggttgtgaagtttttatgcacggtgcataa 22181281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 26447362 - 26447448
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  26447362 ttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 26447448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 36621651 - 36621737
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  36621651 ttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgcacggtgcataa 36621737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 45256090 - 45256004
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||  |||||||||||||||| |||||||||||    
T  45256090 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcataa 45256004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 38485624 - 38485710
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||  |||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||||||    
T  38485624 ttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaagcgtttatgcacggtgcataa 38485710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 51837041 - 51837115
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||| ||||||    
T  51837041 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttatg 51837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 21097255 - 21097169
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| ||| | |||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||  |||||||||||    
T  21097255 ttgatttggtgtaatttaataagcttagaattattacacgtgtaaactagatctaatggttgtgaagtgtttatacacggtgcataa 21097169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 6386516 - 6386565
Alignment:
Q  143 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||||||||    
T  6386516 taggattattacacgtgtccactaaatctgatggttgtgaagtgtttatg 6386565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 1729604 - 1729652
Alignment:
Q  157 gtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaa 1729652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15182028 - 15181820
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag---------annnnnnnnngtcaaaat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||    
T  15182028 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagaggttttttttttttttttttgtcaaaat 15181929  T
Q  92 aaagatatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttat 191  Q
     ||||||||   ||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  15181928 gaagatata---ctttcctatatt-cttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttat 15181833  T
Q  192 gtacggtgcataa 204  Q
    | | |||||||||    
T  15181832 gcagggtgcataa 15181820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 32987395 - 32987481
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  32987395 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 32987481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 39022090 - 39022004
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  39022090 ttgatttggtgtagtttgagaagcctaggattattacacatgtacactagatctgatgattgtgaagtgtttatgcacggtgcataa 39022004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 4836651 - 4836737
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4836651 ttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4836737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 4842096 - 4842182
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4842096 ttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4842182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 7058229 - 7058143
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||    
T  7058229 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataa 7058143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 7614183 - 7614097
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| | |||||||||    
T  7614183 ttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgcatggtgcataa 7614097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 8550619 - 8550533
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  8550619 ttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 8550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 15260801 - 15260887
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  15260801 ttgatttggtgtagtttgagaagccttggattattaaacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataa 15260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 1208805 - 1208738
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataa 1208738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 2750140 - 2750101
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacg 157  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  2750140 ttgatttggtgtagtttgagaagtctatgattattacacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 1671891 - 1671850
Alignment:
Q  145 ggattattacacgtgtatactagatctgatgattgtgaagtg 186  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  1671891 ggattattacacgtatacactaaatctgatgattgtgaagtg 1671850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 41451171 - 41451135
Alignment:
Q  168 atctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  41451171 atctgatgattgtgacgtgtttatgcacggtgcataa 41451135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 5757523 - 5757416
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||    
T  5757523 tatacctctttcctttattccttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacg 5757424  T
Q  197 gtgcataa 204  Q
    ||||||||    
T  5757423 gtgcataa 5757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 32090714 - 32090606
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||| | |    
T  32090714 tatacctctttcctttattccttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgcagg 32090615  T
Q  197 gtgcataaa 205  Q
    |||||||||    
T  32090614 gtgcataaa 32090606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 46573450 - 46573536
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  46573450 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataa 46573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 30428988 - 30428902
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||    
T  30428988 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatgtttatgcacggtgcataa 30428902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32090830 - 32090759
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32090830 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaggcatttttagtgaga 32090759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 33798046 - 33797966
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggt 198  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  33798046 ttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgcacggt 33797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 46024142 - 46024056
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||  |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  46024142 ttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatggttgtgaagtgtttatgcacggtgcataa 46024056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 15974886 - 15974972
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||| ||||| ||||||| |||||||||| ||||| |||| || ||||| |||||||||||||||| |||||||||||    
T  15974886 ttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgcacggtgcataa 15974972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 28396818 - 28396751
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||| |||||||| |||||||||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataa 28396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 48690991 - 48690924
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||||||||||||| ||||||| ||||| ||||||| |||||||| |||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataa 48690924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 48691088 - 48691033
Alignment:
Q  137 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatg 48691033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 12279844 - 12279773
Alignment:
Q  134 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    ||||| ||||||||| ||||||||| || ||||||||| ||| ||||||||| |||||| ||||||||||||    
T  12279844 tgagaggcctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaa 12279773  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 48305327 - 48305265
Alignment:
Q  142 ctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||| ||||||| |||||||| |||| |||| ||||||||||| |||||||||||    
T  48305327 ctaggattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataa 48305265  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 44141226 - 44141287
Alignment:
Q  143 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||||||||    
T  44141226 taggattattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataa 44141287  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 12279740 - 12279670
Alignment:
Q  134 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||| ||||||||| |||||||||||| ||| ||||| ||| ||||||||| |||||  |||||||||||    
T  12279740 tgagaggcctaggatcattacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcataa 12279670  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 5757599 - 5757566
Alignment:
Q  40 gagagagaagtgagcaaagcatttttagtgagag 73  Q
    |||||||||||||||||||||||||||| |||||    
T  5757599 gagagagaagtgagcaaagcatttttagcgagag 5757566  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 50754121 - 50754035
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  50754121 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 50754035  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 52987600 - 52987686
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  52987600 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 52987686  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 23699464 - 23699369
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23699464 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23699369  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 23717919 - 23717824
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23717919 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23717824  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 23736375 - 23736280
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23736375 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23736280  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 51362388 - 51362474
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  51362388 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 51362474  T

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Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23755530 - 23755458
Alignment:
Q  1 gagaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 73  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23755530 gagaagaagatataaggtggcgctggtttgaatgttctagagagagaagtgagcaaagcatttttagtgagag 23755458  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 16277364 - 16277451
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||    
T  16277364 ttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcacggtgcataaa 16277451  T

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Target: chr3; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 23699578 - 23699507
Alignment:
Q  2 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23699578 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 23718033 - 23717962
Alignment:
Q  2 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23718033 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23717962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 23736489 - 23736418
Alignment:
Q  2 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23736489 agaagaagatataaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23736418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 8718216 - 8718130
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  8718216 ttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcataa 8718130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 9070103 - 9070017
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  9070103 ttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcataa 9070017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 19385265 - 19385351
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  19385265 ttgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 19385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 39099312 - 39099226
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||| |||||||||||    
T  39099312 ttgatttagtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatatttatgcacggtgcataa 39099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 7045250 - 7045336
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||    
T  7045250 ttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataa 7045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 23755415 - 23755351
Alignment:
Q  97 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgta 161  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  23755415 tatacctctttcctttattccttgatttgatgtaatttgagaagcctaggattattacacgtgta 23755351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 17627197 - 17627255
Alignment:
Q  134 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 192  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatg 17627255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 13728 - 13642
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| ||||    
T  13728 ttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtggataa 13642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 25182 - 25268
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||| |||| |||||| ||||||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  25182 ttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 25268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 27722 - 27636
Alignment:
Q  118 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||| ||||| |||||    
T  27722 ttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagttgtgaagtgtttatgcacggtacataa 27636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 7116 - 7045
Alignment:
Q  134 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 205  Q
    |||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaa 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 10642 - 10711
Alignment:
Q  135 gagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 204  Q
    ||||| |||||||||||||||  || | ||||||||||||| |||||||||||||||| |||||| ||||    
T  10642 gagaaacctaggattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataa 10711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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