View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-33 (Length: 110)
Name: Solexa-NF5808-33
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-33 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41108062 - 41108171
Alignment:
| Q |
1 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgatagaagagagtttacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41108062 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgt |
41108161 |
T |
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| Q |
101 |
ttacaccctc |
110 |
Q |
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|||||||||| |
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| T |
41108162 |
ttacaccctc |
41108171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41119355 - 41119246
Alignment:
| Q |
1 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgatagaagagagtttacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41119355 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgt |
41119256 |
T |
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| Q |
101 |
ttacaccctc |
110 |
Q |
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|||||||||| |
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| T |
41119255 |
ttacaccctc |
41119246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41129186 - 41129295
Alignment:
| Q |
1 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgatagaagagagtttacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41129186 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgt |
41129285 |
T |
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| Q |
101 |
ttacaccctc |
110 |
Q |
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|||||||||| |
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| T |
41129286 |
ttacaccctc |
41129295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41143497 - 41143388
Alignment:
| Q |
1 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgatagaagagagtttacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41143497 |
gaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgt |
41143398 |
T |
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| Q |
101 |
ttacaccctc |
110 |
Q |
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| T |
41143397 |
ttacaccctc |
41143388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 41035668 - 41035765
Alignment:
| Q |
13 |
ggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgatagaagagagtttacgtttacaccctc |
110 |
Q |
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|||||||||||||| | |||||| |||||| |||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||| |
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| T |
41035668 |
ggaaaccattggatcatgcaaactaattgaagaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctc |
41035765 |
T |
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