View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-36 (Length: 94)
Name: Solexa-NF5808-36
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-36 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 41143070 - 41142977
Alignment:
| Q |
1 |
aaggacatgaacttggacaaacaactaagagctattccagttgcattaaataaagtatattaagtaattaacttgatgaataatctctttgtgt |
94 |
Q |
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| T |
41143070 |
aaggacatgaacttggacaaacaactaagagctattccagttgcattaaataaagtatattaagtaattaacttgatgaataatctctttgtgt |
41142977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41108489 - 41108582
Alignment:
| Q |
1 |
aaggacatgaacttggacaaacaactaagagctattccagttgcattaaataaagtatattaagtaattaacttgatgaataatctctttgtgt |
94 |
Q |
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| T |
41108489 |
aaggacatgaacttggacaaacaactaagagctattccagttgcactaaacaaagtatattaagtaattaaattgatgaataatctctttgtgt |
41108582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41129613 - 41129656
Alignment:
| Q |
1 |
aaggacatgaacttggacaaacaactaagagctattccagttgc |
44 |
Q |
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| T |
41129613 |
aaggacatgaacttggacaaacaactaagagctattccagttgc |
41129656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41118928 - 41118859
Alignment:
| Q |
1 |
aaggacatgaacttggacaaacaactaagagctattccagttgca--ttaaataaagtatattaagtaat |
68 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||| |||| |
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| T |
41118928 |
aaggacatgaacttggacattcccctaagagctattccagttgcactataaacaaagtatattaaataat |
41118859 |
T |
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