View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-37 (Length: 94)
Name: Solexa-NF5808-37
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-37 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 29056808 - 29056853
Alignment:
| Q |
49 |
ttaaagataacgttgacaccaccctttggactctctcacsttcttg |
94 |
Q |
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| T |
29056808 |
ttaaagataacgttgacaccaccctttggactctctcacctccttg |
29056853 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29056760 - 29056788
Alignment:
| Q |
1 |
agttatgaaaagtaataaccttttgaagg |
29 |
Q |
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| T |
29056760 |
agttatgaaaagtaataaccttttgaagg |
29056788 |
T |
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