View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-6 (Length: 152)
Name: Solexa-NF5808-6
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 52712116 - 52712246
Alignment:
| Q |
22 |
gatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatagactgcattaaattgacagagttcattttaaaattcaaaaata |
121 |
Q |
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| T |
52712116 |
gatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatggactgcattaaattgacagagttcagtttaaaattcaaaaata |
52712215 |
T |
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| Q |
122 |
atattacttattaatttaattttaaactttt |
152 |
Q |
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| T |
52712216 |
attttactcattaatttaagtttaaactttt |
52712246 |
T |
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Target: chr3; HSP #2
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 52720936 - 52721033
Alignment:
| Q |
22 |
gatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatagactgcattaaattgacagagttcattttaaaattcaaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||||||||||||||| |
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| T |
52720936 |
gatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatggtctgcattagcttgacagagtataatttaaaattcaaaaa |
52721033 |
T |
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