View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-8 (Length: 141)
Name: Solexa-NF5808-8
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-8 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 3e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 47193463 - 47193603
Alignment:
| Q |
1 |
cataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193463 |
cataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttg |
47193562 |
T |
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| Q |
101 |
gaacagctaaaggtttggcttatttacatgaagagtgtttg |
141 |
Q |
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| T |
47193563 |
gaacagctaaaggtttggcttatttacatgaagagtgtttg |
47193603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 9792564 - 9792698
Alignment:
| Q |
2 |
ataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttgg |
101 |
Q |
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|||| |||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |
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| T |
9792564 |
atagacttttggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattcagttgattggaataagagatttaagatagttgttgc |
9792663 |
T |
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| Q |
102 |
aacagctaaaggtttggcttatttacatgaagagt |
136 |
Q |
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| T |
9792664 |
aacaactaaaggtttcgcttatttacttgaagagt |
9792698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 5e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6609458 - 6609318
Alignment:
| Q |
1 |
cataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttg |
100 |
Q |
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||||||||| |||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
6609458 |
cataggcttctggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattcacttgattggaataagagatttaatgtagttgttg |
6609359 |
T |
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| Q |
101 |
gaacagctaaaggtttggcttatttacatgaagagtgtttg |
141 |
Q |
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| T |
6609358 |
caacagctaaaggtttggtttatgtacatgaagagtgtttg |
6609318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6624663 - 6624803
Alignment:
| Q |
1 |
cataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttg |
100 |
Q |
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||||||||| |||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
6624663 |
cataggcttctggtttatgagtatacggaacatggttcattagttgagaatctatgttctaattcacttgattggaataagagatttaatgtagttgttg |
6624762 |
T |
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| Q |
101 |
gaacagctaaaggtttggcttatttacatgaagagtgtttg |
141 |
Q |
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| T |
6624763 |
caacagctaaaggtttggtttatgtacatgaagagtgtttg |
6624803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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