View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5808-9 (Length: 140)
Name: Solexa-NF5808-9
Description: NF5808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5808-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 44102446 - 44102578
Alignment:
| Q |
8 |
ggcgctgcttggtaacccctttttctcatttttccctttcaaatcaaattctctctcatttcctctccgttattctgaatttgttgtttatgtaatggtt |
107 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44102446 |
ggcgctgcttggtaacccctttttctcattttcccctttcaaatcaaattctctctcattttctctccgttattctgaatttgttgtttatgtaatggtt |
44102545 |
T |
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| Q |
108 |
gaaggggaatttacatcaccggttgtagcttga |
140 |
Q |
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| T |
44102546 |
gaaggggaatttacatcaccagttgtagcttga |
44102578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 51218127 - 51218257
Alignment:
| Q |
8 |
ggcgctgcttggtaacccctttttctcatttttccctttcaaatcaaattctctctcatttcctctccgttattctgaatttgttgtttatgtaatggtt |
107 |
Q |
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| T |
51218127 |
ggcgctgcttgataacccctttttctcattttcccctttcaaatcaaattctctctcgttttttctccgttattttgaatctgttgtttatgtaatggtt |
51218226 |
T |
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| Q |
108 |
gaaggggaatttacatcaccggttgtagctt |
138 |
Q |
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| T |
51218227 |
gaaggggaatttacatcgccggttgtagctt |
51218257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 7e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 2292679 - 2292812
Alignment:
| Q |
8 |
ggcgctgcttggtaacccctttt-tctcatttttccctttcaaatcaaattctctctcatttcctctccgttattctgaatttgttgtttatgtaatggt |
106 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||| ||| |||||||||||||||||| |
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| T |
2292679 |
ggcgctgcttgataaccccttttttctcattttcccctttcaaatcaaattctgtctcgttttctctcagttattctaaatctgttgtttatgtaatggt |
2292778 |
T |
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| Q |
107 |
tgaaggggaatttacatcaccggttgtagcttga |
140 |
Q |
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| T |
2292779 |
tgaaggggaatttacatcgccggttgtagcttga |
2292812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 35528891 - 35529017
Alignment:
| Q |
8 |
ggcgctgcttggtaacccctttttc-tcatttttccctttcaaatcaaattctctctcatttcctctccgttattctgaatttgttgtttatgtaatggt |
106 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| || |
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| T |
35528891 |
ggcgctgcttggtaacccctttttcctcattttcccctttcaaatcaaattctctct---ttcct------tatt--gaatctgttgtttatgtaattgt |
35528979 |
T |
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| Q |
107 |
----tgaaggggaatttacatcaccggttgtagcttga |
140 |
Q |
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|||||||||||||||||||||||| |||| |||| |
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| T |
35528980 |
cgcttgaaggggaatttacatcaccggtagtagtttga |
35529017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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