View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-11 (Length: 140)
Name: Solexa-NF5809-11
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 45883907 - 45884049
Alignment:
| Q |
13 |
ggatgagagagaaaggagcggtggagttgggattgaaatgtatgattagtaagtggaggtgagatagtgtggtagatgatgtaacgga------------ |
100 |
Q |
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| T |
45883907 |
ggatgagagagaaaggagcggtggagttgagattgaaaggtatgattagtaagtggaggtgagatagtgtggtagatgatgtaacggaagcggtggattg |
45884006 |
T |
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| Q |
101 |
---agcgtgtgagtgacatatttccgtcgcaactgaaaactgg |
140 |
Q |
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| T |
45884007 |
cggagcgtgtgagtgacatatttccgtcgcaactgaaaactgg |
45884049 |
T |
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