View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-14 (Length: 131)
Name: Solexa-NF5809-14
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-14 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30835649 - 30835779
Alignment:
| Q |
1 |
gaaccactatgctgccaatacacatccttttaatccaactttgaacctgcacacagaaataaaaacaaccctaattataaatttcaaaaacatgaattga |
100 |
Q |
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| T |
30835649 |
gaaccaatatgctgccaatacacatccttttaatccaactttgaacctgcacacagaaataaaaacaaccctaattataaatttcaaaaacatgaattga |
30835748 |
T |
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| Q |
101 |
ttcaagggtgtgtttgtaacaaaaatatgtc |
131 |
Q |
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| T |
30835749 |
ttcaaggttgtgtttgtaacaaaaatatgtc |
30835779 |
T |
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Target: chr8 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3192362 - 3192486
Alignment:
| Q |
1 |
gaaccactatgctgccaatacacatccttttaatccaactttgaacctgcacacagaaataaaaacaaccctaattataaatttcaaaaacatgaattga |
100 |
Q |
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| T |
3192362 |
gaaccactatgctgccaatacacatccttttaatccaactttgaacctgcacacagaaataaaaacaaccctaattataaatttcaaaaacatgaattga |
3192461 |
T |
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| Q |
101 |
ttcaagggtgtgtttgtaacaaaaa |
125 |
Q |
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| T |
3192462 |
ttcaaggttgtgtttgtaacaaaaa |
3192486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 2192544 - 2192643
Alignment:
| Q |
12 |
ctgccaatacacatccttttaatccaactttgaacctgcacacagaa-----ataaaaacaaccctaattataaatttcaaaaacatgaattgattcaag |
106 |
Q |
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| T |
2192544 |
ctgccaatacacatccttttagttcaacttcgaacatgcacacagtacaataataaaaacaaacctaattagtaatttcataaacatgaattgattcaag |
2192643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 1142551 - 1142512
Alignment:
| Q |
92 |
atgaattgattcaagggtgtgtttgtaacaaaaatatgtc |
131 |
Q |
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| T |
1142551 |
atgaattgattcaaggttgtgtttgtaacaaaaatatgtc |
1142512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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