View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-18 (Length: 127)
Name: Solexa-NF5809-18
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 2556216 - 2556336
Alignment:
| Q |
7 |
agtaggtgtattttgcaagcatgtcgatgatttcggagctcgaatgtgagttgaaggactcgatttaagcatcgttgaatcgttttcggcactgaatgag |
106 |
Q |
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| T |
2556216 |
agtaggtgtattttggaagcatgtcgatgatttcggagctcgaatgtgagttgaaggactcgatttaagcatcgttgaatcgtttccggcactgaatgag |
2556315 |
T |
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| Q |
107 |
ttcttaaaattggttaggtct |
127 |
Q |
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| T |
2556316 |
ttcttaaaattggttaggtct |
2556336 |
T |
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