View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-2 (Length: 211)
Name: Solexa-NF5809-2
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 36530295 - 36530500
Alignment:
| Q |
7 |
atcatgtctataccactgtgtttgtgatgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcatttt |
106 |
Q |
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| T |
36530295 |
atcatgtctataccactgtgtttgtgatgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcatttt |
36530394 |
T |
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| Q |
107 |
agttaatgtctgctagtctagaagtgctgagattgatttgattttattcaatggattttattagattttactctt-aaatttcagcggattgtaaatgga |
205 |
Q |
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| T |
36530395 |
agttaatgtctgctagtctagaagttctgagattgattggattttattcaatggattgtattagattttactcttaaaatttcagcggattgtaaatgga |
36530494 |
T |
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| Q |
206 |
ttgttt |
211 |
Q |
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|||||| |
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| T |
36530495 |
ttgttt |
36530500 |
T |
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