View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-20 (Length: 122)
Name: Solexa-NF5809-20
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-20 |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 7e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 30836177 - 30836063
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30836177 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctc |
30836078 |
T |
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| Q |
108 |
catttctttatctct |
122 |
Q |
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||||||||||||||| |
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| T |
30836077 |
catttctttatctct |
30836063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 18646304 - 18646418
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctc |
107 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18646304 |
cttccatcttctctaaatactcagttctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaagggtcttcttatgctc |
18646403 |
T |
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| Q |
108 |
catttctttatctct |
122 |
Q |
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| T |
18646404 |
catttctttatctct |
18646418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 8023078 - 8023192
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctc |
107 |
Q |
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| T |
8023078 |
cttccatcttctctaaatactcagttctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaagggtcttcttatgctc |
8023177 |
T |
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| Q |
108 |
catttctttatctct |
122 |
Q |
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| T |
8023178 |
catttctttatctct |
8023192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 3192877 - 3192763
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctc |
107 |
Q |
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|||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3192877 |
cttccatcttctctaaatactcagtcctaatattcgggtaacatctctttcaatgaacttatgcattcttcttcttctttgaaaggatcttcttatgctc |
3192778 |
T |
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| Q |
108 |
catttctttatctct |
122 |
Q |
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| T |
3192777 |
catttctttatctct |
3192763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 9e-43
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 1142111 - 1142228
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgca---ttcttcttcttctttgaaaggatcttcttatg |
104 |
Q |
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|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
1142111 |
cttccatcttctctaaatactcaattctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttcttctttgaaagaatcttcttatg |
1142210 |
T |
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| Q |
105 |
ctccatttctttatctct |
122 |
Q |
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| T |
1142211 |
ctccatttctttatctct |
1142228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 31982164 - 31982283
Alignment:
| Q |
8 |
cttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactc--atgcattcttc---ttcttctttgaaaggatcttctta |
102 |
Q |
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|||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
31982164 |
cttccatcttctctaaatactcacttctaatatctgggtaacatctctttcaatgaactcatatgcattcttctttttcttctttgaaagggtcttctta |
31982263 |
T |
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| Q |
103 |
tgctccatttctttatctct |
122 |
Q |
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|||||||||||||||||||| |
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| T |
31982264 |
tgctccatttctttatctct |
31982283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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