View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-21 (Length: 121)
Name: Solexa-NF5809-21
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-21 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 30835795 - 30835909
Alignment:
| Q |
7 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaag |
106 |
Q |
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| T |
30835795 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaag |
30835894 |
T |
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| Q |
107 |
tattttatttccttc |
121 |
Q |
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||||||||||||||| |
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| T |
30835895 |
tattttatttccttc |
30835909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 3192495 - 3192609
Alignment:
| Q |
7 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3192495 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagatg |
3192594 |
T |
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| Q |
107 |
tattttatttccttc |
121 |
Q |
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| T |
3192595 |
aattttatttccttc |
3192609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 1142496 - 1142382
Alignment:
| Q |
7 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||| |||||||||||||||||||||||||||||| | |
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| T |
1142496 |
agaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagcaattgtccgtggtgcgttatgcataaacgatttcagttgcagatg |
1142397 |
T |
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| Q |
107 |
tattttatttccttc |
121 |
Q |
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|||||| |||||||| |
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| T |
1142396 |
tattttgtttccttc |
1142382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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