View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-22 (Length: 121)
Name: Solexa-NF5809-22
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-22 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 34668136 - 34668025
Alignment:
| Q |
8 |
taattattcccgaagagaattgttgatacaatccagaatcatcctgaagaaataaaggaaattctcaagtaataagtaaatttaaaacaagag-gaaatg |
106 |
Q |
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| T |
34668136 |
taattatcccagaagataattgttgatacaatccagaatcatcctgaagaaagaaaggaaattctcaagaaataagtaaactaaaaacaagagaaaaatg |
34668037 |
T |
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| Q |
107 |
gaatctgaaatt |
118 |
Q |
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|||||||||||| |
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| T |
34668036 |
gaatctgaaatt |
34668025 |
T |
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