View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5809-23 (Length: 110)

Name: Solexa-NF5809-23
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5809-23
Solexa-NF5809-23
[»] chr8 (1 HSPs)
chr8 (40-89)||(30278355-30278404)
[»] chr4 (2 HSPs)
chr4 (32-79)||(29086309-29086357)
chr4 (24-79)||(27112407-27112462)
[»] chr2 (2 HSPs)
chr2 (24-65)||(33859228-33859269)
chr2 (42-77)||(25726940-25726975)
[»] chr1 (1 HSPs)
chr1 (42-86)||(29561291-29561335)
[»] chr6 (1 HSPs)
chr6 (24-79)||(2477260-2477315)


Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 30278404 - 30278355
Alignment:
Q  40 taagtaaatattaatctaacagttaactaataacatttgtgattcaacaa 89  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  30278404 taagtaaatattaatataacagttaactaataacatttgtcattcaacaa 30278355  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 29086309 - 29086357
Alignment:
Q  32 cggacgaataagtaaatattaatctaac-agttaactaataacatttgt 79  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  29086309 cggacgaataagtaaatattaatctaacaaattaactactaacatttgt 29086357  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 27112462 - 27112407
Alignment:
Q  24 tttaaactcggacgaataagtaaatattaatctaacagttaactaataacatttgt 79  Q
    |||||||  ||| ||| |||||||||||||||||||| |||| || ||||||||||    
T  27112462 tttaaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgt 27112407  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 33859269 - 33859228
Alignment:
Q  24 tttaaactcggacgaataagtaaatattaatctaacagttaa 65  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||    
T  33859269 tttaaacccggacgaatgagtaaatattaatctaacaattaa 33859228  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 25726975 - 25726940
Alignment:
Q  42 agtaaatattaatctaacagttaactaataacattt 77  Q
    ||||||||||||||||||| ||||||| ||||||||    
T  25726975 agtaaatattaatctaacaattaactactaacattt 25726940  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 29561291 - 29561335
Alignment:
Q  42 agtaaatattaatctaacagttaactaataacatttgtgattcaa 86  Q
    ||||||||||||||||| | ||||||||||| |||||| ||||||    
T  29561291 agtaaatattaatctaataattaactaataatatttgtcattcaa 29561335  T

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Target: chr6 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 2477260 - 2477315
Alignment:
Q  24 tttaaactcggacgaataagtaaatattaatctaacagttaactaataacatttgt 79  Q
    |||||||  ||| ||| |||||||||||||||||||| |||| || ||||||||||    
T  2477260 tttaaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgt 2477315  T

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