View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-3 (Length: 186)
Name: Solexa-NF5809-3
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13447498 - 13447683
Alignment:
| Q |
1 |
cacagattgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggt |
100 |
Q |
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| T |
13447498 |
cacagattgtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggt |
13447597 |
T |
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| Q |
101 |
cnnnnnnnnnnnnnnnngacaggatcccacaaaatctagagatttaaagcacagaaaccagctttacaagaatcttacatttcatt |
186 |
Q |
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| T |
13447598 |
caaaagaaaaagaaacagacaggatcccacaaaatctagagatttaaagtacaggaaccagctttacaggattcttccatttcatt |
13447683 |
T |
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