View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5809-4 (Length: 176)
Name: Solexa-NF5809-4
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 8060709 - 8060541
Alignment:
| Q |
8 |
atgacccactagatatattcacgggcacttgcttccctttgttgtttagcaaaaagccacaaaatcagagcctctcttttatcaaatttgtcacttagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8060709 |
atgacccactagatatattcacgggcacttgcttccctttgttgtttagcaaaaagccacaaaatcagagtctctcttttatcaaatttgtcacttagtt |
8060610 |
T |
|
| Q |
108 |
gtgtggtgcttgacgcttgtatgagccatatatatgtaaatttatgggttcactaaaagcacttctttg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8060609 |
gtgtggtgcttgacgcttgtatgagccatatatatctaaatttatgggttcactaaaagcacttctttg |
8060541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University