View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5809-5 (Length: 175)

Name: Solexa-NF5809-5
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5809-5
Solexa-NF5809-5
[»] chr7 (6 HSPs)
chr7 (6-175)||(6206358-6206526)
chr7 (6-175)||(6232776-6232944)
chr7 (50-88)||(6103989-6104027)
chr7 (32-128)||(6087263-6087359)
chr7 (58-129)||(6092659-6092730)
chr7 (70-121)||(6092593-6092644)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 1e-79; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 6206358 - 6206526
Alignment:
Q  6 cggacgtaggttaataatcagtttcggtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttg 105  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6206358 cggacataggttaataaccagtttcggtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttg 6206457  T
Q  106 gtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatcaccatttgctaactgaaaatatctct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  6206458 gtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatca-catttgctcactgaaaatatctct 6206526  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 6232776 - 6232944
Alignment:
Q  6 cggacgtaggttaataatcagtttcggtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttg 105  Q
    ||||| ||||||||||| |||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6232776 cggacataggttaataaccagtttcggtagagaagttccacagcgtatactgcctttgcacacgatcttcaattgtggtaaatcccacaacaataatttg 6232875  T
Q  106 gtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatcaccatttgctaactgaaaatatctct 175  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||    
T  6232876 gtcaacttgggaagtgcaatgcttgaagtactgtcttcgtcatca-cagttgctcactgaaaatatctct 6232944  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 6103989 - 6104027
Alignment:
Q  50 gtatcctgcctttgcacacgatcttcaattgtggtaaat 88  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6103989 gtatgctgcctttgcacacgatcttcaattgtggtaaat 6104027  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 6087263 - 6087359
Alignment:
Q  32 gtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgct 128  Q
    ||||||||| |||| || |||| ||||||||| | || |||||||||||||||||||   |||||  |||| | |||||||| ||||||| ||||||    
T  6087263 gtggtgaagatccacagcgtatactgcctttgtaaacaatcttcaattgtggtaaattgtacaactccaatgtcgtcaacttcggaagtgtaatgct 6087359  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 6092659 - 6092730
Alignment:
Q  58 cctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgctt 129  Q
    ||||||||||| ||||||| |||||||||||| | ||||   ||  ||||||||||||||| ||||||||||    
T  6092659 cctttgcacacaatcttcagttgtggtaaatctcccaactctaaactggtcaacttgggaaatgcaatgctt 6092730  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 6092593 - 6092644
Alignment:
Q  70 atcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtg 121  Q
    |||||||||||||||||||| | ||||  ||| ||||||||||| |||||||    
T  6092593 atcttcaattgtggtaaatctcccaactccaaattggtcaacttaggaagtg 6092644  T

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