View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-7 (Length: 144)
Name: Solexa-NF5809-7
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 6e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 41920935 - 41921075
Alignment:
| Q |
4 |
cacagatcaatcaattgtagcaacccaaatggatcattgtttcccatactctgatttttggagcaattctacatcaacattatttactaaagaaagtaaa |
103 |
Q |
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| T |
41920935 |
cacagatcaatcaattgtagcaacccaaatggatcattgtttcccatactctgattattggagcaattctacatcaacattatttactaaagaaagtaaa |
41921034 |
T |
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| Q |
104 |
gaatgtgaacctatagttgagatgcccgcatcacctgaatt |
144 |
Q |
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| T |
41921035 |
gaatgtgaacctatagttgagatgcccgcatcacctgaatt |
41921075 |
T |
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Target: chr2 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 1695039 - 1695138
Alignment:
| Q |
43 |
tttcccatactctgatttttggagcaattctacatcaacattatttactaaagaaagtaaagaatgtgaacctatagttgagatgcccgcatcacctgaa |
142 |
Q |
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| T |
1695039 |
tttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaacctatagttgagatgcctgcatcacctgaa |
1695138 |
T |
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