View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-8 (Length: 142)
Name: Solexa-NF5809-8
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-8 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 7723485 - 7723605
Alignment:
| Q |
1 |
caaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaa |
100 |
Q |
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| T |
7723485 |
caaaggcaacacgtgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaa |
7723584 |
T |
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| Q |
101 |
cggccctcgaggcccaaaggt |
121 |
Q |
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| T |
7723585 |
cggccctcgaggcccaaaggt |
7723605 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 32956410 - 32956322
Alignment:
| Q |
33 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt |
121 |
Q |
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| T |
32956410 |
aacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggt |
32956322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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