View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5809-9 (Length: 141)
Name: Solexa-NF5809-9
Description: NF5809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5809-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 55943257 - 55943117
Alignment:
| Q |
1 |
cataggtattcaatgtatcttcctaattgttactatatgtaaataaatgaaaggataaagcatcaaaattgatagcttttaagatgaattatgagagatt |
100 |
Q |
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| T |
55943257 |
cataggtattcaatgtatcttactaattgttactatatgtaaataaatgaaaggataaagcataaaaattgatagcttttaagatgaattatgagagatt |
55943158 |
T |
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| Q |
101 |
atttacttggatcgagatcactggttattgcagcagagttg |
141 |
Q |
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| T |
55943157 |
atttacttggatcgagatcactggttattgcagcagagttg |
55943117 |
T |
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