View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-1 (Length: 250)

Name: Solexa-NF5811-1
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-1
Solexa-NF5811-1
[»] chr6 (9 HSPs)
chr6 (2-250)||(11133284-11133532)
chr6 (10-240)||(11197023-11197253)
chr6 (3-240)||(11170870-11171107)
chr6 (3-240)||(11276254-11276491)
chr6 (3-240)||(11209692-11209929)
chr6 (38-213)||(11156597-11156772)
chr6 (2-240)||(11241076-11241314)
chr6 (38-210)||(11200222-11200394)
chr6 (38-200)||(11161489-11161651)
[»] scaffold1207 (1 HSPs)
scaffold1207 (44-240)||(1185-1381)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 11133532 - 11133284
Alignment:
Q  2 atgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  11133532 atgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacattttgctgctgaggaaa 11133433  T
Q  102 tatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatga 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133432 tatcatcaatggtattgacaaaaattcgtgagattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatga 11133333  T
Q  202 ctcgcaacgccaagctactagagatgcaggtgttattgcacgtctcaac 250  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11133332 ctcgcaacgccaagctactagagatgcaggtgttattgcaggtctcaac 11133284  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 11197253 - 11197023
Alignment:
Q  10 gtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatca 109  Q
    |||||| || ||||||||||| | | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| |||||     
T  11197253 gtggcccttcaaagtaattggcgacctcaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatcg 11197154  T
Q  110 atggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaac 209  Q
    ||||||||| |||||||    || || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  11197153 atggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaac 11197054  T
Q  210 gccaagctactagagatgcaggtgttattgc 240  Q
    ||||  | ||| ||||||| |||||||||||    
T  11197053 gccagtccactcgagatgcgggtgttattgc 11197023  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 11171107 - 11170870
Alignment:
Q  3 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 102  Q
    |||| ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  ||||||||||||||| |||||||  ||||    
T  11171107 tgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaaacattttgctgctgaagaaat 11171008  T
Q  103 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgac 202  Q
     ||||| |||||||||   ||||| || || || ||||||   | ||||||||||| |||| ||||||| ||||||||||| ||||| ||||||||||||    
T  11171007 ctcatccatggtattggtgaaaatgcgcgagatagcagaaaccttccttggatcaatagtggaggatgttgttataactgtgcctgcatactttaatgac 11170908  T
Q  203 tcgcaacgccaagctactagagatgcaggtgttattgc 240  Q
    || ||||||||  ||||| ||||||| |||| ||||||    
T  11170907 tcacaacgccagtctactcgagatgcgggtgctattgc 11170870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 11276491 - 11276254
Alignment:
Q  3 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 102  Q
    |||| ||||||||||| ||||||||||||| | | |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||||||  ||||    
T  11276491 tgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttactgctgaagaaat 11276392  T
Q  103 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgac 202  Q
     ||||| ||||||||| | ||||| || || || |||||||  | |||||||| ||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  11276391 ctcatccatggtattggcgaaaatgcgcgagatagcagaagccttccttggattaacagtggaggatgttgttataactgtgcctgcatactttaatgac 11276292  T
Q  203 tcgcaacgccaagctactagagatgcaggtgttattgc 240  Q
    || || |||||  ||||| ||||||| |||| ||||||    
T  11276291 tcacagcgccagtctactcgagatgcgggtgctattgc 11276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 11209929 - 11209692
Alignment:
Q  3 tgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaat 102  Q
    |||| ||||||||||| ||||||||||| | | |||||||||||||||  |||||||| || || || |  |||||||| |||||| |||||||  ||||    
T  11209929 tgaagttgtggccattcaaagtaattggcgacctaaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaat 11209830  T
Q  103 atcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgac 202  Q
     ||||| ||||||||| | ||||| || || |  |||||||  | |||||||||||||||| | ||||| ||||||||||| ||||| ||||||||||||    
T  11209829 ctcatccatggtattggcgaaaatgcgagagacagcagaagccttccttggatcaacagtggatgatgttgttataactgtgcctgcatactttaatgac 11209730  T
Q  203 tcgcaacgccaagctactagagatgcaggtgttattgc 240  Q
    || ||||||||  ||||| ||||||| |||| ||||||    
T  11209729 tcacaacgccagtctactcgagatgcgggtgctattgc 11209692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 11156772 - 11156597
Alignment:
Q  38 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 137  Q
    |||||||||||||  |||||||| || || || |  |||||||| |||||| |||||||  |||| ||||| ||||||||| |||||||    || || |    
T  11156772 aatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcatcgatggtattggcaaaaatggccgagatag 11156673  T
Q  138 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgcca 213  Q
    | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  11156672 ctgaagtttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatgactcacaacgcca 11156597  T

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Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 11241076 - 11241314
Alignment:
Q  2 atgaaattgtggccatttaaagtaattggtggcataaatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaa 101  Q
    ||||| |||||||| || ||||||||||| | | | |||||||||| ||  | | |||| || || ||||  |||||||| |||||  |||||||  |||    
T  11241076 atgaagttgtggcccttcaaagtaattggcgacctgaatgacaaacacatgactattgttaactataatgacgaggaaaagcatttcgctgctgaagaaa 11241175  T
Q  102 tatcatcaatggtattgacaaaaattcgtgaaattgcagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatga 201  Q
    | ||||| ||||||||| |||||||     | || || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11241176 tctcatcgatggtattggcaaaaatggccaagatagctgaagcttaccttggatcaacagtgaaggatgttgttataactgtgcctgcttactttaatga 11241275  T
Q  202 ctcgcaacgccaagctactagagatgcaggtgttattgc 240  Q
    ||| ||||||||  ||| | ||||||| |||| ||||||    
T  11241276 ctcacaacgccagtctattcgagatgcgggtgctattgc 11241314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 11200394 - 11200222
Alignment:
Q  38 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 137  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11200394 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11200295  T
Q  138 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacg 210  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||||||| || |||||    
T  11200294 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatgattcacaacg 11200222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 11161651 - 11161489
Alignment:
Q  38 aatgacaaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattg 137  Q
    |||||||||||||  |||||||| || || ||||  |||||||| |||||| |||| ||  |||| ||||| |||||||||||||||||  | || ||||    
T  11161651 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11161552  T
Q  138 cagaagtttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatg 200  Q
    | |||| ||||||||||||||||||||||||||| ||||||| ||| ||| | ||||||||||    
T  11161551 ctgaagcttaccttggatcaacagtgaaggatgttgttataattgtgcctacatactttaatg 11161489  T

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Target: scaffold1207 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 1381 - 1185
Alignment:
Q  44 aaacccaatattgttgtcaattacaatggagaggaaaaacatttttctgctgagcaaatatcatcaatggtattgacaaaaattcgtgaaattgcagaag 143  Q
    |||||||  |||||||| || || ||||  |||||||| |||||| |||||||  |||| ||||| ||||||||| | ||||| || || |  |||||||    
T  1381 aaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatccatggtattggcgaaaatgcgcgagacagcagaag 1282  T
Q  144 tttaccttggatcaacagtgaaggatgtcgttataactgttcctgcttactttaatgactcgcaacgccaagctactagagatgcaggtgttattgc 240  Q
      | |||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||| |||||||||||| ||||||    
T  1281 ccttccttggatcaacagtggaggatgttgttataactgtgcctgcatactttaatgactcacaacgccaatctactcgagatgcaggtgctattgc 1185  T

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